Lates calcarifer (barramundi perch): 108881067
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Entry
108881067 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1H
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
lcf04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108881067
04020 Calcium signaling pathway
108881067
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108881067
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
108881067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
108881067
NCBI-ProteinID:
XP_050929811
LinkDB
All DBs
Position
LG11:14666154..14721475
Genome browser
AA seq
2399 aa
AA seq
DB search
MLVILLNCVTLGMFQPCEDVTCQSEWCRILQVLDDCIFAFFAVEMVIKMVALGIFGSNCY
LGDKWNQLDFVIVMAGVMEYSLDGHNASLSAIRTVRVLRPLRAINRVPSMRILVTLLLDT
LPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFLGEDIKKMYNLSIHPYYMSEDGEDS
PFICSAARENGMLRCHDVPPYSEGGAECSLAAPFQSSALIGSTPTVGGASVNGCVNWNQY
YNVCRPGDINPHKGAVNFDNIGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLI
IVGSFFMINLCLVVIATQFSETKQRENALMREQRARYMSNDSTLASYSEPGSCYEEMLRY
ISHLYRKLTRRLQRIYSGWHSKRRKKVNPNGSGGGSNGGGNGHGHGSSRGCGGLGPNSAL
WLRPIHNLLQHHQHQHCRLSNGGQHTISVGTAEHMDGEGGVGGGEELEMKSLPVRRGSTN
GNNSGGGSSGNPSVVTHGMGALLGRLNGGMNYPTILPSFVCSYSSKTPPPHSQQCRPSPE
QHPPNHPASEHTETLNKLYQLMGQHSRQRLLYQLAGVVPSPLLLELLSCPLCARSLETLE
LELGDLEGGRGEADGLHDFPQGGDLRGGRGRSRRRGVVEYKNGVVRAWVDFREKLKRIVE
SKYFNRGIMIAILVNTLSMGIEYHEQPEELTDVLEISNIVFTSMFVLEMGFMLLAFGLFG
YIRNPYNIFDSIIVIISVWEIIGQADGGLSVLRTFRLLRVLKLVRFLPALRRQLVVLMKT
MDNVATFCMLLMLFIFTFSILGMHLFGCKFSLQMENGDTIPDRKNFDSLLWAIVTVFQIL
TQEDWNVVLYNGMASTSPWAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRSESDD
EKKSDNFEEDEKVEQLRDTELKMYSLMMTANGHVDPRGSMAPPIIMRTAATPMPTPKSSL
GPESILGEELMYREGMPRYGEAGLGFSEAGVGHAESRRGSSTSMEPLAYDQHSLSLSSPG
RRSPLPPRGSGSSWGSRRSSWNSLGRAPSLKRRDTSGERESLLSGEGGEEEDSVEDKGEA
GGNNRLRPGSLELLQASTLLPSIIAEYGDCNGRTLTYDPNVNSDPKDDSSPEDDMDDDNS
LCYWIKKELRNMKPRWCKEHEDSSLYLFSPESPFRVWCQSVISHKLFDHVVLVFIFLNCI
TIALERPDIQPHSTERVFLSVSNYIFTVIFLAEMAMKVVALGFCFGNQSYLQSSWNVLDG
LLVFVSLVDILVSLAYTGGNRILGILRVLRLLRTLRPLRVISRAPGLKLVVETLITSLRP
IGNIVLICCAFFIVFGILGVQLFKGKFYHCEGLDTKNITNKSDCLQANYRWIRRKYNFDN
LVQALMSLFVLSCKDGWVNIMYDGLDAVGVDQQPVRNHNPWMLLYFISFLLIVSFFVLNM
FVGVVVENFHKCRQDQEEEEARLREEKRLKMIEKKRRSKENGGAEAKQRPYYADYSPLRL
SIHTLCTSHYLDLFITFIICINVFTMSIEHYNQPQYLEEVLKYCNYVFTIIFIIEALLKL
VAFGIHRFFKDRWNQLDVAIVALSIMGITLEELKMNAALPINPTIIRIMRVLRIARVLKL
LKMATGMRALLDTVMQALPQVGNLGLLFMLLFFIYAALGVELFGKLECNENNPCEGLSRH
ATFENFGMAFLTLFRVSTGDNWNGIMKDTLRECHPDDRHCLSYLPWVSPIYFVTFVLMAQ
FVLVNVVVAVLMKHLEESNKEAKEDAEMDAEIALEMAMERQRRLSTTSNNSSVGGTYVGP
CPNSPGQEEEVQYEDQDMLSTRKMSVSRMHSLPNDSYMFRPVRPASAPYPLDEVDLSPQH
QHSGSVTSVHSQPCESRALLQVPDVSPIHPRSPPTLTLPRIAPPTPSPSPHPLRRQVAVK
VDSVESQGCEQQERPNPVHLPPPSPSSLSPHAASPSPLPPPPPSSPSAFPLPPCSPSAFP
LPPPSPSPLPPLLSSPSSLPPPPSSPSLLLPPPPSPRLPLRPPSLRRPRPPSAASLCDPA
DEEVYHITSSARHRWRDEEGGGQESRGKVSRSHSLSPYTSPHSLDSSPPPPPLLPSCSRS
TLSLLVAGLKDRDYRKGFSVDNQGFLDKPSSLSVGYPDDHRRHSIEVCLPQDVITSDNQH
FRQETHRSEKGGQAFPVRVQSVGGGHRKKKMSPPCISIHPPSEREHPQIASPPKLADCSM
MLRRRTPSYDLTPHTQSNTHMQDVSADTQMRVQMHSPVHAVLTPIHVPLQAHSPTHTLTP
SRGSTPTHTQTYTPPHPSTPTHPHIPISPNIFIQPHAPLVPNAMPFSQTHSLSPAARHSS
LTGDYIPLPQFTFDQPQSRYMSGLSAGLSDTDTATCSSPFDNRLGSSAGFSAKNRRTAQ
NT seq
7200 nt
NT seq
+upstream
nt +downstream
nt
atgttggtgattctgctcaactgtgtgactctggggatgttccagccctgtgaagacgtc
acctgccagtcagagtggtgccgcatactacaggtactggacgactgtatctttgctttc
tttgctgtggaaatggtcatcaagatggtggctctgggaatttttggctccaactgttac
cttggtgacaagtggaatcagctcgacttcgtcattgtcatggcaggggtgatggagtat
tctctggatggccataatgccagtctgtcggccatccgtaccgtccgggtactcaggccg
ctgcgggccatcaacagagttccaagtatgaggatcttggtgacactgctgttggacacc
ctgcccatgttaggaaatgtcctcctcctctgcttctttgtcttcttcatcttcggcatt
gtgggagtccaactgtgggcgggacttctgcggaaccgctgtttcctgggagaggatatc
aaaaaaatgtacaacttgtccatacatccttactacatgtccgaggacggcgaggacagt
ccgttcatctgctcggctgcccgcgagaacgggatgctgcgctgccacgatgtgccgccc
tacagcgaaggcggggccgagtgttcactggccgctcccttccaaagttcagctctgatt
gggtcgacccccacagtgggaggggccagtgtcaatggctgcgtcaactggaaccagtac
tataacgtgtgtcgccccggggacatcaaccctcacaagggagccgtcaactttgacaat
attggctatgcctggatagccatattccaggtcatcacactagaaggatgggtcgatatc
atgtactatgtcatggatgcacactccttctacaattttatatattttatactgctcatt
attgtgggctctttcttcatgatcaacttgtgcctcgtggtcatcgccacccagttctcg
gagacaaagcaaagggagaatgccctgatgagggagcagcgagcgcgctacatgtccaac
gactccacgctcgccagttacagcgaaccaggctcgtgctatgaggagatgctacgctac
atcagtcacctttatcgcaagttaacacgcaggctgcagaggatatactctggatggcac
agtaaacggcgtaaaaaggtgaatcctaatggaagtggtggaggcagtaacggcgggggt
aatggacacggccacggttccagcagaggctgcggaggtttgggcccgaatagcgcgtta
tggctgaggcccattcataaccttctgcaacaccatcagcaccagcactgtcgcctcagc
aacgggggccagcacaccatcagcgtgggaaccgccgaacacatggacggagagggggga
gttggaggaggggaggagctggagatgaagtcgcttcccgtccggagaggaagcacaaat
ggaaataacagcggaggtggcagcagcggcaacccatccgtcgtcacccatggcatgggg
gcattgctcgggcggctgaacgggggcatgaactatccaaccatcctgccatctttcgtg
tgcagctacagcagtaagacgccgccgcctcactcccagcagtgcaggcccagtccagag
cagcacccaccaaaccacccagcgtctgaacacacagagacactgaacaagctctaccag
ctcatgggacagcacagtcgccagaggctgctgtaccagctggcaggcgtggtgcccagc
cctctgctcctggagctgctcagctgccctctgtgcgcgcgcagcctggagaccttagag
ctggaactgggagacctggagggaggcagaggagaggcagacggactgcacgacttcccc
caggggggagatctgagaggtggaagaggtcggagcaggcggcggggggtcgtggagtac
aaaaatggagtggtacgggcctgggtagacttcagagaaaaactgaagaggattgtggag
agtaaatacttcaaccgtgggatcatgatcgctatcctcgtcaatacactcagcatgggg
atagagtaccatgagcagcccgaggagttgactgatgtgttagagatcagtaacattgtc
ttcaccagtatgttcgtcttggagatgggcttcatgctgctggctttcggtttgtttgga
tacatcaggaatccgtacaacatctttgacagcatcatcgttatcatcagtgtgtgggaa
ataatcggtcaggcagacggtggactgtcagtcctgcgaacatttcgtctgctgcgtgtt
ctgaagctggttcgcttcctgcctgccctgagaagacaactggtagtgctgatgaagacc
atggacaatgtggccaccttctgcatgctgctaatgcttttcatcttcactttcagtata
ctgggtatgcatctgtttggttgtaaattcagtctgcaaatggagaatggagacacaatc
cctgaccgcaagaactttgactctttactctgggccatcgtcactgtgttccagatcctt
acccaggaggactggaacgtggtgttgtataatggcatggcatctacctctccatgggca
gctctctactttgttgctctcatgacatttggcaactatgtgctcttcaatttactagta
gccatcttggttgagggcttccaggctgagggtgatgctaatcgatcggagtcagatgat
gagaagaaatcagacaactttgaggaggatgagaaagtagaacagctcagagacactgag
ctcaagatgtactctctgatgatgacagccaatggtcatgttgaccctcgcggctccatg
gctcctcctataatcatgcgaacggcagccacacccatgcccactcctaagagctctctg
gggcctgagtccatcctgggggaggagctcatgtaccgagaggggatgcctcgatatggc
gaggcgggtctgggattttccgaagcgggcgttggtcatgcagagtctcgccgtggaagc
tccacttccatggagcccttagcctatgaccaacattctctgagcctatcaagtcccggc
cggcgctcccctcttcctccccgtgggtccggcagctcgtggggaagccgccgctccagc
tggaacagcctgggaagagcgccgagcctcaaacggcgagacaccagtggcgagagggag
agcctgctgtctggggagggaggcgaggaggaagatagcgtggaggacaagggggaggct
ggggggaacaacaggttgcggccaggatccttggagctgctgcaggcatctactctcttg
ccttccataatagcggagtacggtgactgtaacgggaggaccctgacttacgaccccaac
gtgaactccgaccccaaggatgactcctcacctgaagatgacatggacgatgataactct
ttgtgctactggataaagaaagaactccgtaatatgaagccccgctggtgcaaagagcac
gaagactcgtcgctgtatttgttctctccagaaagcccattccgtgtgtggtgccaaagt
gtgatctctcacaaactgttcgaccatgtggttctggtttttatcttcctcaactgcatc
accattgctctggagagacctgacatacagccgcacagcacggagcgagtgtttctgagt
gtgtccaactacattttcactgtgatcttccttgcagaaatggccatgaaggttgtggct
ctcggtttctgctttggaaaccagagctacctccagtccagctggaatgttctggatggt
ttgttggtgtttgtgtctctggtcgacattctggtctctctggcatacactggcggaaac
aggatcctgggcatcctcagagtcctacgcctgctacgaacactacgcccactcagggta
atcagtcgagccccgggattgaagctggttgtggaaactctcatcacctctctaagaccc
atcgggaacattgtccttatatgctgcgccttcttcatcgtctttggcatcttgggggtg
cagctgttcaaagggaagttctaccactgtgaaggtctggacacaaaaaacatcaccaac
aagtcagactgtctgcaggcaaattaccgctggattcgaaggaagtacaactttgacaac
ctggtccaggccctgatgtcattgtttgtcctgtcgtgtaaggacggctgggtcaacatc
atgtatgatgggctggatgcagtgggagtggaccaacagcctgtgagaaaccacaaccct
tggatgctgctctacttcatctccttcctgctcatcgtcagtttcttcgtcctcaacatg
tttgtcggtgttgtggtggagaacttccacaagtgccggcaggaccaagaggaggaggag
gcccgcttacgggaagagaagaggctcaaaatgatagagaaaaagcgcaggagtaaggag
aatggaggggctgaggccaaacagaggccttactacgcagactactctcccctgcgtctg
tccatccacacactgtgtaccagccactacctggacctcttcatcacctttatcatctgc
attaatgtcttcaccatgagcattgagcactacaatcaaccgcagtatttagaggaggtt
ctgaagtactgtaactacgtgtttaccatcatcttcatcattgaggccctgctcaaactt
gtggcgtttggcatacacaggttcttcaaagacaggtggaatcagctggatgtagctata
gtggcattgtccatcatgggcatcaccctggaggagctgaaaatgaacgcagcattgccc
ataaaccctaccatcatcagaatcatgagagtactcagaatagcacgagtgctaaaactt
ctgaagatggccacggggatgagagctctgctggatactgtcatgcaagcgctgccacag
gtgggaaatctcggtctcctcttcatgctgctcttcttcatctatgctgcgctgggagtg
gagctctttggcaaattggagtgcaatgagaacaacccgtgtgagggcctgagtcgtcac
gcaactttcgaaaattttgggatggccttcctcacgctgtttcgagtgtccactggagac
aactggaatgggattatgaaagacacattaagggagtgtcatccagacgaccgacactgt
ctctcttacctgccctgggtctctccaatttactttgtcacctttgtgctcatggcccag
tttgtgttggtcaatgtggtggtggctgtcttgatgaaacatctagaggaaagcaacaag
gaggctaaagaggatgcagagatggatgcagagattgccttggaaatggctatggagagg
caacgcagattaagcacaacctccaacaacagctcagtgggaggaacctatgttgggcca
tgtccaaattcacctggacaggaagaagaggtccagtacgaagaccaagacatgctgtcg
acaaggaagatgtccgtatccagaatgcactctctgcctaatgacagctacatgttccga
cctgtacggcctgccagcgccccctaccctctggatgaggtagatctcagcccccagcac
cagcattcaggctcggtgacgtcggtccactcccagccatgtgagagtcgcgctctgctg
caggtaccagacgtgtcccccattcaccctcggtcacctcccaccctcaccctgccacgc
atcgccccgcccacgcccagcccctccccacatcccctgcgcagacaggtggcagttaaa
gtggattcagtggagtcccagggttgtgagcaacaggagaggccaaaccctgtccacctg
cctcccccatccccttcttccctctctcctcatgccgcctccccatctccccttcctcct
cctcctccttcctccccctcagctttccccctcccaccctgctccccctctgccttccca
ctccctcccccctctccctcccctctgcctcctctgctgtcttccccttcctctctccct
cctccgccatcttccccctcactccttctccctccacctccctcgccacgtctccccctg
cgtccccccagcctccggagacccagaccgccctctgctgcctccctctgtgaccctgct
gacgaggaggtgtatcacatcacaagctcggcccgccacaggtggagagatgaggaggga
ggcgggcaggagagcagggggaaggtcagccgcagccactccctctccccttacacttcc
ccgcactctctcgactcctcccctcctcctcccccgctactaccttcctgctcaaggagc
acgctcagtctgcttgtggcaggattgaaggaccgtgactacagaaaaggctttagcgtc
gacaaccagggcttcctggacaagccgtcatcgttgtctgttggttaccctgacgaccat
cgccgccactccatcgaagtctgcctcccacaggatgtcatcaccagtgacaaccaacac
tttagacaggagacccaccggtcagaaaagggtggtcaggcatttccagtgagggtgcag
tcagtcggtggcggccacagaaagaagaagatgagtcctccctgtatatccatccacccg
ccttcagagagggaacacccccaaatcgcctcacccccaaaacttgctgactgcagcatg
atgcttagacgcaggacaccctcttatgacttgacccctcacacacagtcaaacacgcac
atgcaagatgtctcagcagacacacagatgcgcgtgcagatgcactccccagtgcacgcg
gtgctaacacctatccacgtaccgctgcaagcacactcgccgactcacacactaacgccc
tcgcggggctctacgccgacacacacccagacgtacactccaccgcacccatccacacct
acgcatccacacatccccatcagcccaaacatcttcatccagcctcatgcacctctcgtt
ccaaacgctatgcctttctcgcagacacactccctctcccctgctgcaaggcactcctct
cttacaggggactacatccccctcccccagttcacctttgaccaaccacagtctagatat
atgagcggcctgtcagctggcctatcagacactgacacagccacctgctcttcccctttc
gacaacagactgggaagcagtgcgggattcagtgcaaagaaccggaggacggcccaatga
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