Lates calcarifer (barramundi perch): 108881771
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Entry
108881771 CDS
T04895
Symbol
spata13
Name
(RefSeq) spermatogenesis-associated protein 13 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
108881771 (spata13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108881771 (spata13)
Membrane trafficking [BR:
lcf04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
108881771 (spata13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
SH3_1
PH
SH3_9
SH3_2
Motif
Other DBs
NCBI-GeneID:
108881771
NCBI-ProteinID:
XP_018529420
UniProt:
A0A4W6DPP5
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Position
LG24:11634405..11648569
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AA seq
1270 aa
AA seq
DB search
MSRAEQKDRGLSTSEDSLPCFHNSKADPLIRSRPLSDIYPFQSQGDRSAVPYLLSGCGAQ
VQPMTAGPLTDERKLNGINSSAWSNPVIGQPEGKPYSSRIMRLFSNSRKGPVPAPSPTTD
CPASAHSNDSNSSPQTWSGLPGLGVVDSFKKLRSSVLQGIQSREATNQDGEYDPSLNQEM
ANGTLVANTDPGPNDGTNNLKTAEGHSVSNGNFTGQKLVVMSQCGSDIDDYDDEENEGDG
LTRNSRFSRSIRRAYGAGRISLLDIGNGRVTGSSANEAADSQKPDHTSKDNVQTENTNST
NVKVLNRLSKSAENLHIFKAPFRRKAPSPGPPLPQEDPQGTTKSNGTPNIQRTASASSVD
LQGHASRRKSPVKTKVPMLKLVGSMTDLTVRRRQSPSPSPTTPSPMSPLSRLHDDYSRRV
PCLQTSERQRRPSPIRARVMSVEHTPLVHHQPEYDVGPQQHQVLISPVPVDPPERTETAA
TASVYKEMADCDSSLLRQKEPSQQQESTEAKLLPKEVTSAQQGREELLQTDEASPTTSGS
TPPISPTAFSESPTSPTSPTASTETSSVKPRRRSGRPRPRPISDYGQLISRKHSIPEEVA
ELRAEERTDTPLLHKDCSDNDTYGNGESPESCGMNGDVQRSRQRPISVIGAVDMFPSDAE
EKDDRLPSPLSRPPIPSHQVPPYRAVSARFRPSALSQSTPIGLDRVGRRKLHRVLSDGVS
ECSATLDDSVSEEEEGSFDELTDVTPYLQPGVEISVLNEWISSGHTVYAEALWDHVTMEE
QELAFKAGDVIRVLDASHKDWWWGRGADREAWFPSSFVRVRVNQEDSSAESVESVADQED
PAPRDTHSAQHKEQMRTNVVQEIMNTERIYIKHLKDICEGYIRQCRKHPDMFTELQLKTI
FSNIEDIYKFQRQFLRDLEKKYNKDQPHLSEIGSCFLLQGEGFSIYSEYCNTHPAACAEL
QRLMKSGRYKHFFEACRLLQQMIDISIAGFLLTPVQKICKYPLQLGELLKYTPKDHSDYS
GVSKAYEAMKNVASLINERKRRLESIDTIAHWQVAILHWEGPDVLGRSSELIHSGELTRI
VRQGKMQQRSFFLFDHQLVFCKKDVLRRDLLHYRGRLDMDQTEVVDVPDGRDPDLGLTLR
NALRLRHASTLEFVCVLCCRKAQDKQRWLEAFAKERHRVKEDQEMGMEISEEQRKQAIVN
ARRAKQGKIKPIGYSGSVPPHHQNLHPLHQRHITIPTSVPQQQVFSLAEPPKRKPYHLLY
SITRNAFFRK
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgagcagggcggaacaaaaggacagaggcttgtccacaagcgaggactctctcccatgt
ttccacaactccaaagctgacccgctgatccgaagccgaccactcagtgacatataccca
tttcagagtcaaggtgacagaagtgcagtcccatatctgctgtctggatgtggcgcccag
gtacagccgatgactgcaggtcctctcactgatgagcgcaaactgaacggcatcaactct
tctgcttggtccaaccctgtcataggtcaacctgagggaaagccttactcctcgagaatc
atgaggcttttttcaaactcgaggaagggccctgtccctgctcccagtccaaccactgac
tgtcccgcctcagcccacagcaacgacagcaacagcagcccccagacctggtcaggactt
ccaggattgggtgttgtggactcattcaaaaagctccgctcctctgtgctacagggtatt
cagagtagagaggcaacaaaccaagatggagagtatgacccttcattaaatcaggaaatg
gctaacggtacacttgtagccaacactgatcccggtcctaatgatggaacaaataattta
aagacagcagaaggacacagtgtgtctaatggaaattttactggacaaaagttggttgtg
atgagccagtgtggctcagatattgatgactatgatgatgaggaaaatgaaggagatggt
ctcacacgcaactcccgattctcaaggagtatcagaagagcgtacggagcaggacgcatt
tctttacttgacataggaaacgggagagttacaggaagcagtgcaaatgaagctgcagac
agtcagaaaccagatcatacatccaaagacaatgttcaaacagagaacacaaacagcacg
aatgtgaaggtgctgaacagactgagcaaaagtgcagaaaaccttcatatatttaaggca
cctttcagacgcaaagccccatctccaggtcctcccttacctcaggaagacccacagggg
actaccaagtcaaacgggacaccaaacatccagagaacagctagcgcctcctcagtggac
ctccaaggccacgctagccgcaggaagagccctgtgaagaccaaggtgccgatgctgaag
ctggtaggcagcatgactgacttaactgtccgacgcagacaaagtccctcccccagcccc
acgactccgtctcccatgtcacccctgagccgtctccatgacgactactcccgccgtgtg
ccttgcctacaaaccagtgaacgacagcgccggccctcgcccatcagagcccgggtcatg
tctgtcgaacatacaccgctggttcaccaccaacctgagtacgatgttggcccacagcag
caccaggtcctcatcagcccggttcctgtggatcccccagagagaacagagactgctgcc
acagcaagtgtttataaagagatggcagattgtgattcatctctactccgccaaaaagag
ccttcacaacaacaagaatcaactgaggccaagttgctaccaaaagaggtgacatcagcg
caacaagggagagaggaacttctccaaacagatgaagcatctccaacaaccagcggcagc
acacctcctatctccccaacagccttctcggaatcacccacatcgcccacatcacccacg
gcttccacagaaacatcctccgtcaagcccaggcgaaggagtggccgtccaagacctagg
cccatttctgactatgggcagctcatttccaggaagcactccattccagaggaagtggcg
gaactgcgtgctgaggaaaggacagacaccccattattgcataaagattgcagtgataat
gacacctatgggaatggagagagccctgagagctgcggcatgaacggggacgttcagcgc
agcaggcaacggccaatctcagtgataggagctgtggatatgttcccttctgatgctgag
gagaaggatgaccgccttccttctcccctgtcacggccgcccatcccctcccaccaggtg
cccccctacagagcagtgtctgccaggtttcgcccctcggccctctcccagagtaccccc
atcggactggaccgcgttggacggcgaaagctccacagagtgctcagcgatggtgtgtct
gagtgctcggcgacgcttgatgacagcgtgagtgaggaggaggaaggcagctttgatgag
ctcactgatgtcacgccctacctccagccaggggtggagatctctgtgctcaacgagtgg
ataagctcaggccacacggtgtatgctgaggctctctgggaccatgtgaccatggaggag
caggagctggccttcaaggccggagatgttatccgcgtcctggatgcctcgcataaggat
tggtggtggggcagaggggctgacagagaggcctggttcccctccagctttgtgagggtg
cgagtgaaccaggaggactcgagtgcagaaagtgtcgagagcgttgcagaccaggaagat
ccagctcccagggacacgcacagcgctcagcacaaggagcagatgagaaccaatgtggtt
caggaaatcatgaatactgaacgcatctacatcaagcacctgaaagacatctgtgagggt
tacatccgccagtgccgtaaacacccggacatgtttaccgagctgcagttgaagaccatc
ttcagcaacatagaagacatctacaagtttcagaggcagtttctgagagacctggagaag
aagtacaacaaagaccaaccgcatctcagtgaaataggctcttgttttctcttgcagggg
gagggcttctctatctactcagagtactgtaacacccacccagccgcctgtgctgagctg
cagcgcctcatgaagtcgggccgatacaaacatttctttgaggcctgtcggcttctccag
cagatgatcgacatctccatcgccggtttcttgctcacgcccgtccagaagatctgtaaa
tacccactgcagctgggagaactgctgaagtacaccccaaaggaccacagtgactacagc
ggagtgagcaaagcatatgaagctatgaagaatgtggccagtctgataaatgagaggaaa
aggcggctggagagtattgataccatcgctcactggcaggttgccattctgcactgggag
ggacctgatgtgctggggcgcagttcagagctgatccactctggtgagctgacacgaatc
gtccgacaaggcaaaatgcagcaacgcagcttcttcctgtttgaccaccagctggtcttc
tgcaaaaaagacgtcctgcgcagagacctgctccactaccgcggacggttggacatggac
cagaccgaggtggtggacgtgcctgacgggcgggacccagacctgggcctgaccctgagg
aacgctctgcgtctgcgccacgcctccacgctggagtttgtgtgcgtgctgtgctgcagg
aaggcccaggacaagcagaggtggctagaggcttttgccaaggagagacacagagtcaag
gaagaccaagagatgggaatggagatcagtgaagagcaaagaaaacaggctattgttaat
gccagaagagccaaacaggggaagatcaaacccattggttactctggctctgtcccaccc
caccaccaaaatctgcacccacttcaccagcgtcacatcaccattccaaccagcgtgcct
cagcagcaggtcttttcactggccgaacccccaaaacgaaagccttatcacctgttgtac
agcatcactcgcaacgcctttttcaggaaataa
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