Lates calcarifer (barramundi perch): 108882931
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Entry
108882931 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: protein transport protein Sec24C
KO
K14007
protein transport protein SEC24
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108882931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108882931
Membrane trafficking [BR:
lcf04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
108882931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_helical
Sec23_BS
zf-Sec23_Sec24
Gelsolin
Motif
Other DBs
NCBI-GeneID:
108882931
NCBI-ProteinID:
XP_050922125
LinkDB
All DBs
Position
LG23:13862217..13880024
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AA seq
1232 aa
AA seq
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MNVNQHTPMASPYGQPQPGYSQPGYAPLDGGYPAPYAPYNGPASAYQPGAPPQGYSPFTS
FPSKAVTANPVSDLSSPLDLGPARGPPASGPPPVSAPQPYNQYSHSQGDMQNGPPTMTQA
PPRPAASQPYNPGAMNLSGPHPSYPQHYGPPSTIQQVTNQMTGMQIASGPPTPAGPGYAP
PHSSQPPVSTAYSAAPPPSYTQAIPPVSSAPTQPPPPSGPATSQQYYGGPPPSSQQPFNS
SLPPTSQQQFTSSAPPPPSSQQTFPPTSYSGPVPPPSQAPAPPVSQSQQSFPPTQPPFSS
APPPVSQPAFLSGPPPPVQGSFPPRAPPPSSQPGSFPPPGPPPTSTSSQYPGPMPPQQQP
PLSQPSPYHSGPPPPRAQMPPTSMPQSNHLPPGPQGPPGPPGPLQQPPPQPGMQGGYPPQ
QNGAFGQVRGPQPGYAGPYPGQPNYGAPAPAPAPAPPAQKRLDPDAIPSPIQVIEDDKAK
STEPFTTGVRGQAPPLVTTNFQVKDQGNASPRFIRCTAYNMPCTADMAKQSQVPLAAVIK
PLATLPPDETPPYVVDHGEGGPIRCNRCKAYMCPYMQFIEGGRRFQCGFCSCVTEVPPHY
FQHLDHTGKRVDCYDRPELSLGSYEFLATVDYCKNNKLPQPPAFVFLIDVSYNAVKSGMV
SIVCQELKTLLDYLPRENPEMDSVVRVGFVTYNKVLHFYNVKSSLAQPQMLVVSDVSDMF
VPLLDGFLVNVNESRLVIESLLDQIPEMFADTRETETVFGPVIQAGLEALKAADCAGKLF
VFHTSLPIAEAPGKLKNREDKKLIGTDKEKSLFQPQVGFYNNLAKECVAQGCCVDLFLFP
NQYVDVATLGVVPVSTGGSVYKYTYFQAQSDQERFLNDLRRDIQKPVGFDAVMRVRTSTG
IRATDFYGSFFMSNTTDVELAGLDCDKAITVEFKHDDKLSEETGALMQCAMLYTSCSGQR
RLRIHNMAVNCCSQLADLYRNCETDTIINFFSKYAFRGILNNPTKAVRDTLVNQCAQILA
CYRKNCASPSSAGQLILPECMKLLPVYLNCVLKSDVLLPGADVSLDDRAYLRQLISCMDV
AETHVFFYPRLLPLMKLESGSLPVAVRDSEERLSKGGVYLLETGLHLFLWVGASAQQELL
LNIFGTQSFSQIDPSMTSLPVLDNPFSQRLREIIDSFRAQRSRYMKLMVVKQEDRAELIF
RHFLVEDKSASGGASYVDFLCHMHKEIRQLLS
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtaaaccagcacactccaatggcctctccatacggccagcctcagcctggctac
agccagcccggctacgctcccctggatggggggtaccctgcaccttacgcaccctacaat
ggcccagcttcagcctaccagcctggggctccgccacaaggttactctcctttcacaagc
tttccctctaaggctgtgacagccaacccagtctctgacctctcctctcctctcgactta
ggtcctgccaggggtcctcctgcttctggacccccgccagtctcagcgcctcaaccatat
aatcagtacagtcacagtcagggggatatgcagaatggacccccaactatgacgcaggca
ccacccaggcctgctgcgtctcagccatacaatccaggagctatgaacctgtcagggccg
caccccagctatccccaacactacgggcccccatcgacaatacagcaggtcaccaaccag
atgactgggatgcagattgcctctggaccaccaaccccagcagggccaggatatgctcca
cctcatagctcccagcctcctgtcagtaccgcctactcagctgcacctccaccctcctac
acccaagccattcctcctgtgtcctctgctcccacccagccaccacctcccagtggccct
gcaacttctcagcaatactacggaggcccaccgccttcttctcaacagccattcaactct
tctcttccccctacctctcaacagcagttcacctcctctgcaccgccgcctccttcctct
cagcagacctttcctcccacctcctactctggtccggtgcctccacccagccaagctcct
gctcctcccgtgtcccagtcacagcaatccttccccccaacccagccccccttctcctca
gcacctccacctgtcagccagcctgccttcctctccggtccacctccccctgtccagggc
tctttcccacccagagcacccccaccttcctctcagcctggatcttttcctcctcctggt
cctcctcccacctcaacctccagccaatacccaggccccatgccaccccaacagcagccc
ccactatcccaaccatccccttatcactcaggtccacctcctcccagagctcagatgcct
cccacttctatgccccagagcaaccacctgcctccaggaccacagggcccaccgggccct
cctgggcccctgcagcagcctccacctcagcctggcatgcagggagggtaccctcctcag
cagaatggtgcgtttgggcaggtgagaggccctcagcctggctatgcaggcccctatccc
gggcaaccaaactatggagcccctgcaccagcaccggctcctgctccacctgcacagaaa
agacttgacccagatgccattcctagcccgatccaggtaatagaggatgataaggctaag
agcactgagccattcaccacaggggtcagaggtcaggccccgccgctggtcaccaccaac
ttccaggtcaaagaccaagggaatgccagtcccaggttcattcgctgtacggcgtacaat
atgccttgcacagccgatatggccaagcagtctcaagtgccactggctgctgtcatcaag
cccctcgccacgctgccaccagatgagaccccgccatatgtggtggaccatggggaaggc
ggtccaatccgctgcaaccgctgcaaggcctacatgtgtccatacatgcagttcatagag
ggaggtcgccgcttccagtgtgggttctgcagctgcgtaacagaggtgcctccacattac
ttccagcatctggaccacaccggtaagagggtggactgctacgacaggccagagctgtcg
ctgggcagctacgagttcctggctacagttgactactgtaagaacaataagcttcctcag
cctccagccttcgtcttcctcatcgatgtgtcctacaacgctgtgaagagcggcatggtc
agcattgtctgccaggaactcaagacccttctagactacctgcccagggagaacccagaa
atggactcagtggtgcgggtgggttttgtcacttacaacaaggttttgcacttctacaac
gtcaagtcaagcttggcccagccccagatgttggtggtgtcggatgtatcggacatgttt
gtgcccctgctcgatggtttcctggtcaacgtaaatgagagccggctagttattgagagt
ttattggatcaaatcccagagatgtttgcagacaccagagagacagagacggtctttgga
cccgtgatccaggcgggactggaggcactgaaggctgcagattgtgcagggaagctgttt
gtgtttcacacctctctgcccatcgcagaggctcctggaaaattaaaaaatagagaggac
aagaagctgattgggacagataaggagaagtctctgtttcagccccaggtgggtttctac
aacaacctcgctaaggagtgtgtagcccagggctgctgcgtagatctcttcctcttcccc
aaccagtatgtggacgtcgccacgttaggagtggttcctgtctccactggaggttcagtc
tacaaatacacctacttccaggctcagtcagatcaggagcgattccttaatgacctcaga
cgagacattcagaaaccagtagggtttgatgccgtcatgagggtgcgaaccagcacaggt
atccgagcaacagacttctacggctccttcttcatgagtaacaccacagatgtggagctg
gcaggcctggattgtgacaaggccatcactgtcgagttcaaacacgatgacaagctcagc
gaggagacgggggcgctcatgcagtgtgccatgctgtacaccagctgcagcggacagagg
cgtctccgcatccacaacatggccgtcaactgctgctcacagctggctgacctctaccgc
aactgtgagaccgacacaatcatcaacttcttctccaaatacgctttccgtggcatcctg
aacaaccccactaaggcagtgagagacaccctggtcaaccagtgtgctcagattctggcc
tgctaccggaagaactgtgcgagcccttcatcagctggtcagctgatcctcccagagtgc
atgaagctgttacctgtgtatctgaactgcgtgctgaagagtgacgtgctgctgccggga
gccgacgtctcattggacgaccgggcttacctgaggcagctgatcagctgcatggacgtc
gcagagacccacgtcttcttctacccccgcctgctgccactgatgaagttggaaagcggt
tcgttgccggtggcggtgagggactcagaggagaggctgtcaaaaggtggggtttacctc
cttgagacggggctccatctcttcctgtgggtgggagccagcgctcagcaggagctgctg
ctcaacatctttggcacacagagcttcagccagatcgacccaagcatgacaagtctacca
gtgctggataatcctttctctcagagactcagagagatcatcgactccttcagagcacag
cgatcacgatacatgaagctgatggtggtgaaacaggaagaccgagccgagctgatattc
aggcacttcttggtcgaggacaagagcgccagcggaggagcgtcatacgtggacttcttg
tgtcatatgcacaaggagatccgccagcttctcagctag
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integrated database retrieval system
