Lates calcarifer (barramundi perch): 108883571
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Entry
108883571 CDS
T04895
Name
(RefSeq) neurocan core protein
KO
K06794
neurocan core protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lcf00535
]
108883571
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108883571
04091 Lectins [BR:
lcf04091
]
108883571
Proteoglycans [BR:
lcf00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
108883571
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
108883571
Lectins [BR:
lcf04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
108883571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
EGF
Sushi
V-set
hEGF
EGF_2
EGF_CA
Chordopox_A33R
Motif
Other DBs
NCBI-GeneID:
108883571
NCBI-ProteinID:
XP_018532398
LinkDB
All DBs
Position
LG4:complement(14628148..14668649)
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AA seq
1236 aa
AA seq
DB search
MVLALCAAGRQILFALMLLFYLSLGEASSIVNMRRITHPTVQQTLAGKAVLPCVFTLQTS
SSGQPPHLLWTRTRLPAGGQGAPLEQTVLSAKGDVIKVNKAFSGRVMLPGYTANPLNATM
EISSLRTNDSGTYHCQVVMGNDYERDTVPLVVSGVVFHYQAPSARYALSFTDAQRACQEN
SAQIATPAQLWAAYYDGFASCATGWLDDQTVRYSVQLPELGCYGHKEYSAGVRNYGKRDP
KELFDVYCFAKELDGEVFHSSVPGRLSLSSASDRCVSLGGQLATVGQLYLAWRAGLDSCA
PGWLSDGSVRYPVTWPRPDCGGSQPGVRTVTPNSTADNTTVLYDAYCYRGKVKNTGSISQ
IYTSLWRPWSYLTGSSDADSTGTVSPDLTTQQTTTTTESSKGSDVSPSNWTGLVDLEEEA
MLHSADASADPWSTESSGSYVTLQLIPGQSSLDWGEPLEPGPDSEEFFRPPVHPTPADKK
VISKIVKSIWKPWNYLVGTGDQEGTQSPKGQTGEEETATKNTNNESNPSSTASPGLFSWG
TSWFSSPPRESATPASEDSPTHLASSSAASSIPVTTESTTSRENSETHTSTASTAPEMTS
SSGDTWVRVEVETTTQPGDKREETVTSRASGRGGRGRGKKNRGEDRGRGEERGRGEEKGK
GEDEGSGEITGAEAKGEIQVSRRPVGTSKPRERSRERSRERGHRKGQSTASTATTTTASP
VEPTVVTTTVSESADFSTSKSLSALPAETPSPSVLADTYQTLSSSPSTSPSTSPSPSVSV
FTSFPQSSPSQPLFESQSPSPSPSLSSSTSPSPTISSPSSTSQTPSLSHSQSSPSSYSPS
QTVGSGEPSSSPHSDNQDSSTNPPTSSRWVPVEEAGLNSSRDYPPILSLHPDEEEPTWSH
AVGSGALLPGNMEEESSRGSNISTITPVPTIEVEPCVTNPCLHGGKCLPQGTGYSCYCPQ
GYTGENCEIDVDDCQSEPCENGGTCVDKIDSFLCLCLPSYGGDTCEKDVEGCEHGWRKFH
GHCYRYFTHRHTWEDAEKDCREHSAHLSSVISAAEQEFINGLGHDNAWIGLNDRTVEEDF
QWTDGNDLVYENWRESQPDNFFAGGEDCVVTIAHEDGKWNDVPCNYNLPYICKKGTVLCG
TPPTVENAHLIGRRRSHYDIHSVVRYQCSEGFYQRHIPTARCRADGSWERPRIICTKSRR
SHRYRRHHHNQHHERHGHRRHGGEGHKAREDAHSYY
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atggtgctcgctctgtgtgcagctgggcggcagatcctctttgctctgatgctgctgttc
tatttaagcttgggtgaagcctcctccatagtgaacatgcgtaggatcacccatcctaca
gtacaacaaacactggcaggcaaagccgtcctcccctgtgtcttcaccctccagaccagc
tcctccggccagcctccccacctcctgtggactcgcaccaggctgccagcaggaggacaa
ggtgcacctctggagcagactgtgctctcagctaaaggtgatgtaatcaaggtgaataag
gctttcagtggccgcgtcatgctgccaggatacactgccaatcccctgaatgctaccatg
gagatctccagtctccgtaccaacgactcaggcacttaccactgtcaggttgtcatgggt
aacgactatgagagagacactgtgcccctggtggtctccggtgtggtgtttcactaccag
gctccaagtgcccgttacgccctctcatttaccgacgcacagcgagcctgccaggaaaac
tctgctcagattgccacaccagcccagctgtgggcagcgtactatgatggctttgccagc
tgtgcaaccggctggttggatgatcagaccgtccgttattctgtccagctgccagagctt
ggttgctatggacacaaggagtactctgctggagtgaggaattatgggaagagggacccg
aaagagctgtttgacgtgtactgttttgcaaaagaactggatggtgaggtgtttcactcc
tcagtcccgggccggttgtctctgtcttcagcctcagaccgctgcgtgtcccttgggggg
cagctggccacggtagggcagctatatctggcctggagagccggcctggacagctgcgct
ccaggctggctgtctgatggcagcgtccgctacccggtgacctggcctcgcccggactgt
ggagggagccaaccgggagtccgcacagtcacacccaacagcactgctgacaacactaca
gtgctgtatgatgcttactgctacagaggtaaagtgaagaatacaggctccatctctcag
atctacacctccctgtggaggccctggagctacctcacaggctcaagtgatgctgactct
acagggacagtcagtcccgatctgactacacagcaaaccaccactaccacagagtcctca
aagggcagtgatgtttctccttcaaactggacaggactggttgaccttgaagaggaggcc
atgcttcacagcgctgatgcttccgcagacccctggtccacagagtcctctggatcctat
gtgaccctccagctgatcccaggacagagctccttagactggggagagccgctggagcct
ggtccagactcagaggagttcttccgacccccagtccacccaacacctgctgataagaag
gtgatctcaaagatcgtgaagtccatctggaagccttggaactacctggtggggactgga
gatcaggagggaacccaatcaccgaagggacaaacaggggaagaggagacagctacaaag
aacactaataatgagtctaatccatccagtacagcatcaccaggtttgttttcttgggga
acttcatggttcagcagtcccccgagggagagcgctacaccagccagtgaagactcaccc
actcatctggcatcttcttcggccgcctccagtattcctgtgactacagagagcaccacg
agccgggagaattcagagacccacacgtccaccgcctccacagcacctgaaatgacctca
tccagtggggatacctgggtccgtgtcgaagtggagaccacaacccagccaggcgacaag
agggaagagacagtgacctccagagcgagcgggagaggaggcagagggagggggaagaag
aatagaggggaggacaggggcagaggagaagagaggggcagaggagaggagaaagggaaa
ggagaagatgaagggagtggagaaatcaccggtgcagaggcaaaaggggagatacaagtc
tcacgacgaccggttggaacaagtaaaccaagagagaggtccagggaaagatcaagagag
aggggtcacaggaaaggacagtccactgcctccaccgccacgactaccactgccagtcct
gtggagcccacagtggtgaccacaactgtgtcagaaagcgctgacttttctacgtccaaa
tccctgtctgctttaccagcagaaaccccatccccgtcagttttggcagacacatatcaa
acactgtcctcatctccatccacatctccgtcaacctcgccgtccccatcagtctcagtg
tttacatcctttcctcaatcatccccatctcaacccctgtttgaatcccaatctccctcc
ccatccccgtctctttcctcttccacatccccctctccaaccatttcctcgccttcatcg
acttcccagaccccatccctctcacactcacagtcgtcaccatcttcctattcaccatct
caaacagttggatcgggagaaccatcgtcatctcctcactcagacaaccaggacagctcc
actaaccctccaacgtcgtctcgctgggtccccgtggaggaagcaggtctgaacagctct
cgggattatcctccaatactgtcattgcacccggatgaggaggagcccacttggtctcac
gcggtgggctcaggggccctgttacccggcaacatggaagaggaaagcagcagagggtct
aacatcagtaccataactccggtcccaacaatcgaggtggagccctgcgtgacaaaccca
tgtctgcacggaggaaagtgccttcctcagggaacgggctacagctgctactgcccacaa
ggatacactggggagaactgtgagattgatgttgatgactgccagtccgagccctgtgaa
aatggaggcacttgcgtcgacaagattgattcattcctctgcctttgcctgcccagctat
ggaggagacacgtgtgagaaagatgtagaaggttgcgagcatggttggaggaagttccac
ggccactgctacaggtacttcacccacagacacacctgggaggacgcagagaaggactgc
agggaacacagtgctcacctcagtagtgtcatctccgctgcggagcaggagtttatcaac
ggtctgggtcatgataatgcctggataggactaaatgaccgcacagtggaggaggacttt
cagtggactgatggaaacgatctggtatatgagaactggagggagagccagccagacaac
ttcttcgcaggtggcgaggactgcgttgtgaccattgcccatgaggatggcaagtggaac
gatgtgccctgcaactacaacctgccctacatctgcaagaaaggcacagtgttgtgtggg
accccgcccacggtggagaacgcccatttgataggtcgccggcggtcacactatgacatc
cattcagtggtgcgctaccagtgctctgagggcttctaccagcgtcacatccccactgct
cgctgccgggccgacgggagctgggagagacccaggatcatctgcacaaagtcccggaga
tcccaccggtacagacgccaccaccacaatcagcaccatgaacgccacggccacaggaga
catggaggggagggacacaaggccagagaggacgcacacagctactactga
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