Lates calcarifer (barramundi perch): 108884501
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Entry
108884501 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
lcf
Lates calcarifer (barramundi perch)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108884501
NCBI-ProteinID:
XP_018533925
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All DBs
Position
LG5:27567403..27591999
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AA seq
1659 aa
AA seq
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MDNLSTVKTVSSGGGAGGSSKVVTKSVTTTRLTSQSELSLSAGGSGGRAASGGSGGTSST
VVITSSSSHTGSSGRSGASKGTGGISVTTVEASSAVSSSGGRLGSGSGSGAGVAAGAGAG
AGAGAAAGFKAAGGGSSTMSSSFISGGREGKREGGLGAVTVSTVTKTSYSSGGSGEAKRG
SSSAVTYSPAPKERKSMTTMAAAVSDVFDESSSTNSSPEYNRKAYGISSATSTSATRGRT
QSRESEIRTRLQSASPPASWTELDDVKRLLRGNHSTSTSPTQSPNNTLPIPKKASVETRT
MSESSTADHYGSIWPGGVSSSYSYNTNPNNLSTPSALYQSGVQNNLTFSSPSVNSGLSAS
STVPVYGVQNNLTSASPTVLSPTGTASQIVYGVQKNLFNIMSLAVRPGSPTNDEASGKDF
KFVMVEKENAPVKKETERLIMTKDTGKQFMSAAPAATSATYSEDSLKREKQKLSTSTVEE
GTDAKSSSLKVATKDKATYAEIHKDESGFGFWSCCSWWKWLLGLLLSLLLLLGLLFGLIA
LGEEVRRLKNRVDALEAITGTASARSSRLSASSGINIIDPLDSSYIDRSSSGPTLTRSDN
TINLGAAGPGGGVGSGPGQDSAGLQRTVQQLVRAELRSDAVRESLVYSLKGERGEPGPKG
DPGAFGQKGDSGFPGLPGPPGQMGHPGLDGPRGPKGSAGEPGAEGPPGQRGREGPMGPRG
ENGPPGFGEKGDKGSQGEPGRPGPAGALGPVGPKGAMGEHGAPGSPGAPGPKGFQGEAGA
PGVKGDRGTPGLPGTKGEQGERGPRGGIGEPGQPGPQGPAGSKGTKGVAGDSGPMGLPGA
RGPPGLPGDIGPPGTPGLQGPPGIAGNPGQPGGKGEPGLPGKVITSGGSDTVTIPGPPGP
AGSPGPAGPPGLSGPIGPAGVPGQPGPKGPQGEKGEKGEKGEKGEKGEKGEKGEQGEPGV
PGVKSSETVSATQTDKLSSAAGVPGPPGPPGPPGPPGPQGLPGESKQGPPGRRGPPGEPG
VGSPGPPGEKGEPGSFVPTSETFFAGPPGPPGPAGPQGSAGEQGPQGYRGEPGQPGLPGS
PGEPGVGFPGQPGPRGPPGPEGPEGPQGPKGDAGVPGAPGIPGVSGGSSFSPGPPGPPGP
PGPPGRDGSGTGSPDVGQYISEYLQSGGIREYLAGPPGPPGPPGPPGTAGDGQVDDVANR
VIAYIQSRGYDGTPGPPGPPGPPGSVSVNDIISLLQREDVQRYVAGPPGPPGPPGAPGFG
SYGVNTQEVAERVLSLMNERGVLGVPGPPGPPGPPGNLLATGYQAIVGPPGPPGSPGVPG
PQGPQGPPGPAGPPGFGNYITSDIRDYLQSVAFRGPPGPPGPPGPEGPPGPVRGLVSYAE
HANRELFKAEQQQYVKSDAVRGAMFGLPGPPGPPGPPGHKGEPGVPGTRDQSPDTGDYSS
MAVRVTDYIKSNGLLRDVLRDSERVIQGPPGPPGPPGIPGQSQWVSSRENVLDVVEYLKS
RGVLHNIVREYNSRVFQGPPGPPGPPGPPGYTRWFGSRGNATELLEYIKSHGLLHDIERS
HSGAIQGPPGPPGPPGPPGYSRLFGSHANVTDLVEYFKTHGAIVGPPGRPGQKGDIGFPG
LKGQKGEQGLPGPEGRQGQKGDRGEFTMMTKRRKRNVGV
NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atggacaatctaagtacagtcaaaactgttagttctggtggaggtgctgggggtagtagc
aaagtggtcacaaaatcagtcacaactactcgactgacctcacaaagcgagctttctctg
agtgcaggtgggtcagggggaagagctgcatcaggaggctctggaggcacaagcagcaca
gttgtgatcacgtccagcagctcccacaccggcagctctggcagatctggagcaagcaag
ggcactggagggatcagtgtcactacagtagaagcatcctctgctgtatcctcaagtgga
gggaggttaggctctgggtcagggtcaggggcgggtgtagcagcaggagcaggggcaggg
gcaggagcaggagcagctgcagggtttaaggctgctggagggggatcttccactatgtcc
tctagttttataagtggtggcagagagggaaaaagggaggggggtttaggtgctgtaaca
gtttccacagtgaccaagactagctacagttctggtggatctggggaagcaaagagagga
tcatcctctgcagtcacttattcacctgctccaaaagagaggaagagcatgaccaccatg
gcagcggctgtctcagatgtctttgatgaaagttcgagtacaaactcgtcccctgagtac
aacaggaaggcgtatggcatatcaagtgcaacttcaacttctgccaccagggggagaacc
cagagcagagagagtgagatcagaaccagacttcaaagtgcttctcctccagcaagttgg
acggagctggatgacgttaagcgcctgctaagaggaaaccactcaaccagcaccagtcca
actcagtcccccaacaacacgctgcccatccccaagaaggccagtgtggaaaccaggacc
atgtctgagagttccaccgcagaccactatggcagcatttggcctggaggtgtgagcagt
agctacagttacaataccaaccccaacaacctgtccactccctccgccctttaccaatca
ggagttcagaacaacctgacattcagctctccctccgtgaatagtggactatctgcaagc
agcactgtcccagtgtatggtgttcagaataatctgaccagtgccagccccactgtactc
tctcccactggaactgcctcacagatagtttatggtgtacagaaaaatctttttaatatc
atgtctcttgcagtgagacccggcagtcccactaatgacgaggcctcaggcaaagatttt
aagtttgtgatggtagagaaggagaatgctcctgtcaagaaggagacagagagactcatc
atgaccaaagacacagggaagcagttcatgtctgctgcaccagctgctacgtctgcgacc
tactctgaggactcactgaagagagagaaacagaagctatcaaccagcacagtggaggaa
ggaacagatgctaaatcttcaagcctaaaagttgccacgaaagacaaagccacatatgca
gagatccataaagatgaatcaggctttggattctggtcctgctgtagctggtggaagtgg
ctgctgggcctcctgctcagcctgctcctcctccttggactcctcttcggactcatcgct
ttgggtgaagaagtgagacgcctcaagaaccgtgttgatgctttagaagccatcactggc
actgcctcagccaggtccagtcgcctatcggcctcttcaggcatcaacatcatcgacccg
ctggattcgtcatacatcgacaggagctcctctgggcccaccctgacgcgctctgacaac
acgatcaacttgggggctgctgggcctggaggaggtgtggggagtggaccaggacaggat
agtgctggcctgcagagaaccgttcagcagctggtcagggctgaactccgctctgatgct
gtaagagaatcacttgtttactctctgaagggagagagaggagaaccaggacctaagggg
gatccgggggcatttgggcaaaaaggtgatagcggcttccctggtctgccaggtcctcct
gggcagatgggtcacccaggactggatggaccaaggggaccaaagggaagtgcaggtgaa
ccaggtgccgagggaccacctggacagaggggccgggaggggccaatgggcccacgagga
gagaatggaccacctggatttggagagaaaggagataaaggctctcaaggtgagccagga
cgccccggtcctgctggtgcccttggacctgtggggccgaagggtgccatgggagagcat
ggtgccccaggaagccctggtgctcctggtcccaagggtttccagggtgaagcaggagct
ccaggagtgaaaggtgaccgaggaactccaggactgccaggaaccaagggagaacaggga
gagaggggaccacgtggaggaataggtgaaccgggacaacctggaccacaaggccctgct
ggatctaagggaactaaaggagttgcaggtgactcaggtccaatgggacttcctggtgcg
agaggaccacctggacttcctggagatattggtcccccaggcacccctggtcttcaagga
cccccaggtattgctggaaatccaggacagcctggtggtaaaggtgaacctggtttgcct
ggcaaagtcatcacttcaggtgggtctgatactgtcaccatccctggacctccagggccc
gctgggtctccaggtcctgctggaccccctggtttgtccggtcccattggtcctgctggt
gttccaggacaacctggtcctaaaggaccacaaggtgaaaagggagaaaaaggagaaaaa
ggagaaaaaggagaaaagggagaaaagggggagaagggagaacaaggagaacctggtgtg
cctggtgtcaaaagttcagaaactgtcagtgccacccagaccgataaactttcctcagcg
gcaggtgtgcctggtccaccaggacccccagggcctccaggaccacctggtcctcagggt
ctccctggtgagagtaaacaaggtcctccaggacgcagaggtcctccaggagagccaggt
gttggatcacccggacccccaggagagaaaggagaacctggcagctttgtgcctacatca
gagaccttctttgctggaccaccaggacctccaggacccgcaggcccacagggttcagca
ggtgaacaaggaccacaagggtaccggggtgaaccaggtcaaccaggtctaccaggaagt
ccaggggaaccaggtgttggtttcccaggtcagcctggacctagggggcctccagggcca
gaggggccagaggggccacaaggacccaaaggtgatgcaggagtccctggagccccagga
atcccaggagtctctggtggtagttcattcagtcctggaccaccaggcccacctggccca
cctggcccacctgggagagatggaagtgggactggatcacctgatgtgggccagtacatt
tcagaataccttcaaagtggtggcatcagggagtatctggctggacctcctggacctcct
ggtcctccaggacctccagggactgcaggggatgggcaggtggatgacgttgccaaccga
gtcatcgcctacatccagagtagaggatatgatgggactcctggtccgcctggtcctcca
ggtccaccagggtctgtctctgttaatgacatcatcagcctattacaacgagaggatgtg
cagagatatgttgctggtcctcccggtccaccaggacctcctggagctccaggatttggc
agctatggagttaacacccaggaggtggctgaacgggtcctcagtcttatgaatgagagg
ggggtgttaggtgtccctggaccccctggacctcctgggcctcctggaaacttgttagca
actggttatcaagcaattgtgggtccaccagggcctcctggttctccaggtgtccctggt
ccacaaggaccacaaggaccacctggaccagcagggccaccaggatttgggaactacata
acctcagacattcgtgactacctgcaaagtgttgccttcagaggccctccaggtccccct
ggtcccccaggacctgagggcccccctggaccagtccgtggactggtttcctatgctgag
catgccaaccgagagttgttcaaagcagagcaacaacaatatgtcaagagtgatgctgtg
agaggagctatgtttggacttcctggtccaccaggccctcctggacccccaggacacaag
ggagaaccaggtgtacctggcaccagagaccagagcccggacactggagactactccagt
atggctgtcagagtaactgattacatcaaatccaacggtctgctccgtgatgttttgaga
gactctgaacgtgttatccaaggacctccagggccccctggacctccaggaatacctgga
caaagccagtgggttagttcccgtgaaaatgtcctggatgtggtggaatacctcaaatcc
cgtggtgtgctgcacaacattgtgagggagtacaacagtcgtgtcttccaaggacctcca
ggaccgcctggccccccaggtcctccaggatacacccgatggtttggttcacgtggaaat
gccacagaactgttggaatacatcaaatcgcatggtctgcttcatgacattgagcggagt
cacagtggcgccatccaagggccaccaggaccacctggccccccaggcccaccgggatac
agccgattgtttggttcccacgcaaatgtcacagatttagtggaatacttcaaaacacat
ggagccattgtaggaccacctgggagaccgggacagaaaggggacataggtttcccaggc
ctaaaaggacagaaaggtgaacaaggccttcctgggcctgagggacgccaaggacaaaag
ggtgacagaggagaattcacaatgatgactaaaagaagaaagaggaatgttggcgtttga
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