Lates calcarifer (barramundi perch): 108885400
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Entry
108885400 CDS
T04895
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X3
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
108885400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108885400
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108885400
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
108885400
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
108885400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BTB
Motif
Other DBs
NCBI-GeneID:
108885400
NCBI-ProteinID:
XP_018535259
LinkDB
All DBs
Position
LG5:complement(21371600..21384039)
Genome browser
AA seq
1770 aa
AA seq
DB search
MARRLVTLGLKSPAPSLSALEQANERPVEALGVTQEMLGRQLRSQQQQQHHQQLHHHHQQ
QQLHHLHQHHQQLHHQQQQQLHHQPAAAAPPPPPAAAAPPPPPPPAAAAAAAPPPSGAPP
PPTAVAAPPPPPPPSAAPPPPAAAAAPPPPSAAAPPPPSAATPSAAAPPPPTAVAAPPVP
AAAAPPTAAPPPAAGPGPRAERGLRAKDKVLLRMQQFKRESPQRMTHKNQSQPTNQENDS
GHHPQPQKQAGPPSPLRADPPQPCSSNLQVESDEALALKLQQELDREAAEAETVDLEDGG
LFFCQICHRDLSHMTPDGRTQHLNRCLDKSEESAPAAPPPPPPPGVPDCPICGKKFKSQK
SRSAHLKRCSSDLGVPPAVLLEALQRQAEETQNALTTNTLAQTGGTKRKAPPKPGLPVRK
KPRKKTDPLDEDTMVALALSSSMLEQEREAGRKLQTEIAASHTSMAPELKWRPDAGKGRG
KKKKGAVPRPPPLLLVQDAQEALVRLQERVSALLLRTRPPTPPTPTCCPSSLPGCSGAAP
LWEKSALLNSSSTCLSDFYTPELREFITPWESTTTNKASSSDGNRLESSLQPVSEGTPVT
RTRSSILPSSAQTVASSPAPSTPGTGQLPVGSQTLRDLMEVAEDGMTLTQCGYTTSGPDK
DKQSRVSLSTNLHLSGFVLEEAEEQADLCSSGFLPETIHTLSEDTRSRDQPRADMEQGSH
RSVALSRLASNLSSMVNNPQLSDLQLQVDSGEVYFAHSFMVYARCPLLAEMVHESGFGVR
EEGMPAAQRVLMSDVPGQAVFTLLQYLYTAHCSIPASLRPHVLELASRFDMQELQQLCEL
HQEEADDMNHEENVNDQTGQAFIELLRSMWTEEDEEDEGTDTDGAKDEERGSEENGQTDD
VTSGEREICEEQVNEEELEEIYEFAATQRKREEEKNSVEEEEKVDDGEDGEEVLAELTEP
KKGLSEKTPKLSSQLEPDPSLDRSCSRLFTDSWGVYEEKDPSSSSSSTSGLPKTHTSQSQ
RGHSSHKPSCKFSSRTLLHSSPSLVDDLFPSPPHSTSNLPIPGLSPAQLGNWGGGGGDKG
TDAAEWEAVKESPSLKRESQGPRSICVAVSPGSPSKKEEPELIVLSDSSEEMEVDLAVLS
SRSPSPRSPCTVQNLQSYTRIKPQSVPRSTGPTVENRVFSSLEFSPGDPPAASVQRHPGS
GCEQSPVDCSPEVSWLIPSTPVQPGRCSSSTQTKSSMCRTRLFPKGDSSSPSSASSSPGP
RLHNRLKTSSSGTRASAHAGPTESSVPRLKPDEAGPNSSSLDLSFSPKGKSNYNSSKSRE
EFAAPLCQPKFSHLSSSTHCHPLQASLNTDTPLHIQPQPHSSTPLHTELDPRPVLPAASP
LHSSLKKQRSNSQGRDRAPSESPEKTELVSFHLSPLSDPSDLPSSSSHRGLQSSQRHSKS
SSESGCSVESSSQKRTGIRNEEGEGETECQNKDTCDEGEQEEAEEEGRETEVAESSFRQS
FMDEPPIAFNDSWGLDACVEANPGCFSLRLEDSTGSNQQEHSQGQRDAPRSSSSTDCPSP
PMNSSPSKTHSAPPIATIQARTSSSFTPTPPNPNNSFLDSKIWDSWVEEDAVEALPLSQR
VNPSAQLKTPVSSRSKKRRSLVPITPMPHYSDMDTPELKNKLNRFGVRPLPKRQMILKLK
EIHQYTHQLVSSDSEDEALTTGRAAQKPPSTTSAGAGSRLVSCARTVTFKEPRAPAAMKH
KGGEGEEELLSASQGSNTSSTAASEESESR
NT seq
5313 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaagactggtgactctgggtctaaaatcaccagcacccagtctgtccgcactg
gagcaagccaacgagcggccagtagaggcactgggtgtgactcaggagatgctgggtcgt
cagctgcgctctcagcagcagcagcagcaccatcagcagctccaccaccaccaccagcag
cagcagctccaccacctccaccagcaccatcagcagctccaccaccagcagcagcagcag
ctccaccaccagccagcagcagcagctccaccacctccaccagcagcagcagcaccacca
cctccaccaccaccagcagcagcagcagcagcagcaccaccaccatcaggagcaccaccg
ccaccaacagcagtagcagctccaccacctccaccgccaccatcagcagctccaccacca
ccagcagcagcagcagcaccaccgccaccatcagcagcagcaccaccgccaccatcagca
gcaacaccatcagcagcagcaccaccgccaccaacagcagtagcagctccaccagtacca
gcagcagcagcaccaccaacagcagcaccaccaccagcagcaggaccaggacccagagct
gagagaggtctgagagcgaaagacaaagtactcctcagaatgcaacagttcaagagagag
agtcctcagaggatgacgcacaagaaccagagccagccgacaaaccaagagaacgacagt
ggtcaccatccacaaccacaaaaacaagctgggccaccctcccctctgcgtgcagatcct
ccacaaccttgcagctctaatctccaggtggagagcgacgaggcgctggccctaaagctg
cagcaggagctggatagggaggcagcagaggcggagacggtggaccttgaggatggaggc
ctcttcttctgtcagatctgccacagagacctgtcacacatgactcctgatgggcgaaca
cagcatcttaacaggtgtttagataagagtgaagagagcgccccagccgctcctcctcct
cctcctcctcctggtgtccctgactgtcccatctgtggcaagaagttcaagtcccagaag
agtcgctcagcccacctgaaacgctgctcctcagacctgggtgtgcctccagctgtgttg
ctggaggctctgcagagacaggctgaggagacccagaatgccctcactactaacacactt
gcacaaactggaggcaccaaaaggaaagccccccccaagccaggccttccagtgaggaag
aagcccaggaagaagactgatcccctggatgaagacaccatggtggctctggctctgtcc
tcctccatgctggaacaggagagggaggcagggagaaagttacaaactgagattgctgct
tctcacacctccatggctccagagctgaagtggagaccagatgcaggtaaagggcgtggg
aagaagaaaaagggcgccgtccctcgtcctcctccgctcctcctcgttcaggatgctcag
gaggccctggtgaggctgcaggaacgtgtgtctgctctcctcctacgcacccggcccccc
actccccccaccccgacctgctgccccagcagtctgcctggctgcagcggtgctgccccc
ctctgggagaaaagcgcactgctgaacagcagctccacctgtctgtctgatttctacact
ccagagctcagagagttcatcacgccttgggaatcgacaacgactaacaaagcctcctcc
agtgatggcaacaggctggagtcttctctccaacctgtgagtgaaggaactcctgttaca
aggaccaggtcctccatcctgccatcttctgcccagactgtagcctcctccccggctccc
tccaccccagggacagggcagctcccagtgggcagccagaccctgcgggacctgatggag
gtggctgaagatggcatgaccctcacacagtgcggatatactacctcaggccccgataaa
gacaagcagagccgtgtcagtctgtccacaaaccttcatctcagtggctttgtgctggag
gaggcagaggagcaagctgatctgtgttcgagcggcttcctaccagaaaccatacacaca
ctctcagaggacacacgcagccgagatcagccaagagcagatatggagcaaggcagccac
cgatcagtggcactatccagactggcctcaaacctcagcagcatggtgaacaatcctcag
ctcagtgatttgcagctccaggtggacagtggagaggtctactttgcccattccttcatg
gtgtatgctcgctgccccctgctggcagaaatggtacatgaaagtggttttggggtgcgg
gaggaaggcatgcctgcagcccagagggtgttgatgagtgacgtcccgggacaggcagtg
ttcactctgctgcagtacctctacacagcccactgctccatcccagcgtcattgcgacct
catgtactggagctggcatccaggtttgacatgcaggagctacagcagctttgtgagctc
caccaagaggaggcagacgacatgaaccatgaggagaatgtcaacgaccaaacaggccag
gccttcatagagctcctccgctctatgtggactgaagaggacgaggaagacgaggggacg
gatacagatggagcaaaggatgaagagagaggttcggaagagaacggtcaaactgatgat
gtaacatctggtgagagggagatttgtgaggaacaagtgaatgaggaagagctggaggag
atctatgagtttgctgccacgcagagaaagagagaggaggagaaaaacagcgtggaggag
gaggaaaaggtggatgatggagaagatggagaagaagttctcgcagagctgacagaacct
aaaaaaggcctcagtgagaaaaccccaaagctgagctctcaacttgagccagaccccagc
ctggatcgcagctgcagtcgcctcttcacagattcttggggagtctacgaggaaaaagac
ccctcttcctcctcatcctcaacctccggcctgccaaagacacatacctctcaatctcag
agaggccattcctctcataaaccttcatgcaaattctccagcagaactttgcttcattct
tcaccaagcttagttgatgaccttttccccagccctccacacagtacatccaacctgcct
atcccaggcctgtcccctgcacaattgggcaattggggtggtggtggtggagacaaggga
acagatgctgctgaatgggaagcggttaaagaatctccatctttgaagcgagaaagccaa
ggtcctcgtagtatttgcgttgccgtttctcctggttcaccctcaaaaaaggaggaacct
gagctcatagttttgtctgactcgagcgaagagatggaggtagatcttgctgttcttagc
tcccgcagtccttcgccacgttctccttgcaccgtccagaacctgcagagctacacccgg
atcaaacctcagtcagtcccgagatctactggacccaccgtggagaatagagtgttcagt
agtttagagttcagtcccggtgatccacctgcagcctcggttcaacgtcatccaggttcc
ggttgtgagcagagtccggtagactgctctccagaggtttcctggctgatcccatctaca
ccagtgcagcccggaagatgcagcagctccacacagactaaaagcagcatgtgcaggacg
cggctgttccctaaaggtgatagctcctcaccctcttctgcttcctcttctcctggtcca
cgacttcacaacagacttaagacctcaagcagtggaaccagagcttctgcccacgctggc
ccaacagagagcagtgttcctaggttgaaaccagatgaggctggtcctaatagctccagc
ttggatcttagcttttcccccaaaggaaagagtaattataattcaagtaagagtagagaa
gagtttgcagctcccctgtgccaaccaaagttctcacacctctcaagctcgactcactgt
catcccctccaagcttccttaaatacggatacacccctccacatccagccacagcctcac
agcagcacacctctgcatacagagctcgacccacgacctgtccttcctgctgcctccccg
ctccacagtagtctcaaaaagcagaggtcgaacagccagggaagggacagggcgccatcg
gaaagcccagagaagacagagctagtgagcttccatctctcccccttgtccgacccttca
gatctaccttcctcttcatctcacagaggtcttcaaagttcacagagacacagcaagtcc
tccagtgaaagtggatgctctgttgagtccagcagtcagaagaggacaggaataagaaat
gaggaaggagaaggagaaacagagtgccaaaataaagacacgtgcgatgaaggagagcaa
gaagaagcagaagaagaaggcagggagacagaggttgcagagtccagtttccgacagagc
ttcatggatgagcctcccattgcttttaacgactcctggggcctagatgcctgcgtggag
gccaacccaggctgcttcagtctgaggctggaggacagcacaggatccaaccagcaggag
cacagccaaggacaaagagacgcgcccaggtcatcatcctctacagactgtccatctcca
ccgatgaactcctctccatccaaaacccatagtgcaccaccaattgccaccatacaagct
cgtacaagctcgtccttcaccccgacaccaccaaaccctaacaacagcttcctggactcc
aaaatatgggacagctgggtggaggaggatgcggtggaggctcttccactctcacagagg
gtcaacccttctgctcagctcaaaaccccagtgtcatcacgcagtaaaaaacgtcgctcc
ttggtgcctatcactcccatgcctcactactctgacatggacacaccagagctcaagaac
aaactcaacaggtttggtgttcggcctttaccgaagcgccagatgatcctcaaactgaag
gagatccaccagtacacccaccagctggtcagctcagactctgaggatgaggcactcact
acagggcgcgctgctcagaagcccccttccaccacttcagcaggcgctggcagcaggctg
gtctcctgcgcccggacagtgacgttcaaagagcccagagcgcccgccgccatgaaacac
aaaggaggagagggggaggaagagctgctttctgcctcacagggctctaacacctcttca
actgctgccagtgaagaatctgaaagcaggtaa
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integrated database retrieval system
