Lates calcarifer (barramundi perch): 108888037
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Entry
108888037 CDS
T04895
Name
(RefSeq) photoreceptor-specific nuclear receptor
KO
K08546
nuclear receptor subfamily 2 group E member 3
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108888037
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
lcf03310
]
108888037
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
108888037
Nuclear receptors [BR:
lcf03310
]
2. Hepatocyte nuclear factor 4 like
2E. Tailless like receptor
108888037
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
108888037
NCBI-ProteinID:
XP_018539353
UniProt:
A0A4W6EFM3
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Position
LG2:complement(11837112..11850965)
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AA seq
435 aa
AA seq
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MMEDHLSKIPMMPSSSPTESSASGGTDDSRGAKSPAPGKALSPALVCKVCGDTSSGKHYG
IYACNGCSGFFKRSVRRRLIYRCQAGTGMCPVDKAHRNQCQACRLKKCLQAGMNKDAVQN
ERQPRSTAQVRLDSIDVDPEKEHLATTREPTSSSSSSSSSSSSSSSGSVITWPHITSSMS
ITSSVAPQRCISPQNNHRFMASLMTAETCAKLEPEDVDENIDVTSNEPERASSEYHMALY
PSSSENVYETSARLLFMSVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPLE
SCPLLSLPDLCPGMQGKTSYTSLDLRLLQEVFSRFKALAVDPTEFACLKAIVLFKPETRG
LKDPEQVENLQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTI
GNTPMEKLLCDMFKN
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggatcacctgtcgaagatccccatgatgccgtcctcttcccccactgagtcg
tctgccagcggcgggactgatgacagcagaggagccaagagtccagccccgggcaaagct
ctgagcccagctctggtctgcaaagtgtgtggagacaccagcagcgggaaacactatggc
atctacgcctgcaacggctgcagcggcttcttcaaacgcagtgtgaggaggaggctcatt
tacaggtgtcaggctggtacaggcatgtgtccagtggacaaagctcatcgcaaccagtgc
caggcctgtcggctgaagaagtgccttcaggcaggcatgaataaggatgcggtgcagaat
gagcggcagccccgcagcacagctcaggtccgtctggactctattgatgtggacccggag
aaggagcacctggccaccacacgggagcccacctcctcttcctcctcttcttcctcctcc
tcctcctcttcctccagtggctctgtcatcacgtggccccacatcacctcctccatgtcc
atcacctcctctgtcgccccccagcgctgcatcagtccccagaacaaccaccgcttcatg
gccagcctcatgacggctgaaacctgcgccaagctggagcccgaggacgttgacgagaac
attgatgtaaccagcaatgagccggagagagcgtcctcagagtatcacatggctctgtat
ccgtccagctctgagaacgtgtatgagacctcagcgaggctgctcttcatgtcagtgaag
tgggccaaaaacctgccggtgttttccaacctgcccttcagagaccaggtgatcctgctg
gaggaggcgtggagcgagctcttcctgctctgtgccatccagtggtctctgcctctggaa
agctgcccgctgctctctcttccagacctttgccctggcatgcaggggaaaaccagctac
accagcctggacttacgcctcctgcaggaggtcttcagccgcttcaaggccctcgctgtt
gatcccacagagtttgcctgcctcaaagccattgtgctcttcaagccagagactcgcggt
ttgaaagatccagaacaagtggagaacctgcaggatcagtctcaagtgatgcttggacaa
cacatccgctcacattatcccagtcaaccagccaggtttggaaagctgcttcttcttctt
ccctctctgcgttttgtgaactcagagcggatagagctgctgttcttccacaggaccatt
ggaaacactcccatggagaagcttctgtgtgacatgttcaaaaactaa
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