Lates calcarifer (barramundi perch): 108889031
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Entry
108889031 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: transmembrane channel-like protein 2-A
KO
K21988
transmembrane channel-like protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108889031
03037 Cilium and associated proteins [BR:
lcf03037
]
108889031
Transporters [BR:
lcf02000
]
Other transporters
Pores ion channels [TC:
1
]
108889031
Cilium and associated proteins [BR:
lcf03037
]
Other cilia and associated proteins
Stereociliary proteins
108889031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
Arc_capsid_dom
Motif
Other DBs
NCBI-GeneID:
108889031
NCBI-ProteinID:
XP_018540823
LinkDB
All DBs
Position
LG9:complement(3124624..3136567)
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AA seq
942 aa
AA seq
DB search
MPRKSDIAKMDDVGIDVDGDVSDSDDGGTQRRGNRRQAGGRGGAKGRGRGKKPAXDEDDE
DEEEDEAPRGRRGANKKKPAKKRGGHDDEDESEDEAPKKKGGRGGAANKRKGGKAQDSDE
EDSDDGKGKKGKKGGGKKGGKEEEDSKGKKGKDKGKDKDDDKDKKKKKKKDDSSTDSNMD
SDEEEESMSEGEMARLMEEVEEKKKLIANIRNKPWRMKRRLTHLKEAQQFVDKFEGALGK
GKGRKWYAYKVMMTKKWIKFQRDFENFRTACIPWERKIKEVESHFGSSVASYFIFLRWMY
GMNLVLFGFTFGLVVIPEVLMGLPYGSIPRKTVPRAEQATAQDYSVLMDFNGYCKYSVLF
YGYYNNQRTIGLLKFRLPLSYLMVGIGTFGYSLMVVIRTMAKNADVGGGDGEEGEFTFAW
KMFTSWDYLIGNAETADNKYASITTSFKESIVDEQENQKDENIHLRRFLRVLANFLITCS
LGGSGYLIYFVVKRSQEFATRNDLSWYEKNELEIIMSLLGLVCPPLFETIAELEDYHPRI
ALKWQLGRIFALFLGNLYTFLFALFDEVNTKLEEEQAIKNASIWAMKEYYANYSRLVNDS
LATPPPMNPADVIRGPCWETAVGIEFVKLTVSDIQVTYLTILIGDFARAVIVRFLNYCWC
WDLEAGFPSYGEFDISGNVLGLVFNQGMIWMGAFYAPGLVGINVLRLLSSMYYQCWAVMA
TNVPHERVFKASKSNNFYMGLLLLILFLSLLPVVYTIMTLPPSFDCGPFSGKEKMFDVIM
ETIDLDLPAFMGTLFSYAANPGLIIPAVLLMVLAIYYLNSVSEAYKNSNMELKKKMQMAR
DEEKNRRNNTDSTNQVMKDLEDLLPNRSLAPPAPEPEKPPEPEAKPTKTKPGKGVNLQKD
VALASPNPNVQRPVRQPPGPRGAGPMPGPGPGRGRGRGPPPR
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgccgagaaaaagtgatatagcaaaaatggatgacgttgggatagacgtagacggggat
gtgagtgacagtgatgatggtggcacccagaggagagggaacaggaggcaggcaggtgga
agaggaggtgcgaaggggagaggccggggcaaaaaacctgccnntgatgaggacgacgaa
gacgaggaggaggatgaagctcccaggggacgcagaggcgcaaacaagaagaagcctgca
aagaaacgtggtggtcatgatgacgaggatgagagcgaggacgaagctcccaagaagaaa
ggaggacgaggaggagcagccaacaagaggaaaggaggcaaagctcaggacagcgatgag
gaggacagtgacgatgggaaaggaaagaaggggaagaagggaggagggaagaaaggaggc
aaggaggaggaggatagtaagggaaagaaagggaaggacaaggggaaagacaaggatgac
gacaaggacaagaagaagaagaaaaaaaaggacgacagttcaactgactccaacatggac
tctgatgaggaggaggagtccatgtcggagggagagatggcccggctgatggaggaggtg
gaggagaagaagaaactgatcgccaacatcaggaacaagccatggaggatgaagcggagg
ctcacgcacctgaaggaggctcaacagtttgtggataagtttgaaggtgctttaggcaaa
ggaaaaggcaggaagtggtatgcctacaaagtgatgatgacaaagaaatggatcaagttt
caaagggattttgagaacttcagaacagcttgtatcccctgggagaggaagatcaaagag
gtggaaagtcactttggatcatctgtggcatcttactttatctttctgcgctggatgtac
ggcatgaatctcgtcctctttggtttcacttttggactggtggtcatccctgaggttctg
atgggccttccctatgggtcaattcccaggaaaactgttcccagagcagagcaggcgacg
gctcaggactactctgtcctcatggacttcaacggctactgcaaatactcagtcctgttt
tatggatattacaacaaccagaggaccattggcttgctgaaattccgactgcctctgtcc
tacctcatggtcgggattggcaccttcggctacagcctgatggtggtgattcgcacaatg
gcaaagaacgctgatgtgggtggcggagatggagaggaaggagagttcacatttgcctgg
aagatgttcaccagctgggattacctcatcggcaatgcagagaccgccgacaacaaatac
gcctccatcaccaccagcttcaaggagtccattgtggacgaacaagagaaccagaaggat
gagaacattcacctgcggaggttcctcagggtcctggccaacttcctgattacctgcagc
ctcggcggcagcggatacctcatctacttcgtggtgaagaggtctcaggagtttgccacc
aggaacgacctcagctggtacgagaagaacgagctggagatcatcatgtctctgctgggt
ctggtgtgtcctcctctgtttgagaccatcgctgagctggaggactaccatcctcgaatt
gccctcaagtggcagctggggcgcatcttcgccctcttccttggaaacctctacaccttt
ctgttcgccctgttcgatgaggtcaacaccaagctggaagaagagcaagccataaagaac
gcctccatctgggccatgaaggagtactacgccaactactcacgtctggtcaacgactcc
ttggccaccccgccccccatgaaccctgccgacgtcatcagaggaccctgctgggaaacc
gctgtcggcattgagtttgtaaagctgacagtgtcggacatccaggtgacctacctgacc
atcctgatcggtgacttcgccagagccgtcattgtccgcttccttaactactgctggtgc
tgggacctggaggctggatttccgtcgtacggagagtttgacatcagtgggaatgttctt
ggattagtcttcaatcaagggatgatctggatgggtgcgttttatgctcccgggctggtc
ggcatcaacgtgctccgcctcctcagctccatgtactatcagtgctgggccgtgatggcc
accaatgtcccccacgagagagtcttcaaggcctccaagtccaacaacttctacatgggt
ctgttgctcctcatcctcttcctcagtctgttacctgtcgtctacaccatcatgaccctg
ccgccttcgtttgactgtggacccttcagcgggaaggaaaagatgtttgatgtgatcatg
gagacgattgacctggacctgccggccttcatgggaacgctcttcagctacgcagccaac
ccaggcctcatcataccagctgtattactcatggtactggccatctactacctgaactca
gtgtctgaggcctacaaaaactccaacatggagctgaagaagaagatgcagatggctcgg
gatgaagagaagaatcggagaaataacacagacagcaccaatcaggtcatgaaagacctg
gaggacctgctgccgaaccgctccctcgccccccctgctccggagcctgaaaaaccacca
gagccggaagcaaagccaaccaagacgaagcccggcaaaggtgttaacctgcagaaagat
gtggctctggcatcacccaaccccaacgttcaaaggccagtgagacagccaccggggccg
agaggagcaggaccgatgccgggtccaggtccaggacgaggccgcgggagagggccccct
ccaagataa
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