Lates calcarifer (barramundi perch): 108890100
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Entry
108890100 CDS
T04895
Name
(RefSeq) peroxisome proliferator-activated receptor gamma isoform X1
KO
K08530
peroxisome proliferator-activated receptor gamma
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03320
PPAR signaling pathway
lcf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108890100
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
108890100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108890100
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
lcf03310
]
108890100
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
108890100
Nuclear receptors [BR:
lcf03310
]
1. Thyroid hormone like
1C. Peroxisome proliferator-activated receptor (PPAR)
108890100
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Motif
Pfam:
PPARgamma_N
zf-C4
Hormone_recep
Tmemb_55A
Motif
Other DBs
NCBI-GeneID:
108890100
NCBI-ProteinID:
XP_018542407
UniProt:
A0A4W6F2X5
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Position
LG12:complement(25240567..25272191)
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AA seq
552 aa
AA seq
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MQTPGKDFNHQSGHNFSADMVDTQQLLAWPVGFSLNAVDLSELDDSSHSLDMKHLSTLDY
TPISSTSIPSSLSPPLVSSISSIGVAYDPSPPQSEEHLTNMDYTNMHSYRTEPNMHNSIK
LEPESPPQYSDSPVFSKLQDDTSATSLNIECRVCGDKASGFHYGVHACEGCKGFFRRTIR
LKLVYDHCDLHCRIHKKSRNKCQYCRFQKCLNVGMSHNAIRFGRMPQAEKEKLLAEVSSD
MEHMHPEAADLRALARHLYEAYLKYFPLTKAKARAILSGKTGDSAPFVIHDMKSLMEGEQ
FINCRQMPIQEHQQQTSALTAAHGGIAGVHMGPDCGILGTTGISGHEPTDTVELRFFHSC
QSRSAEAVREVTEFAKSIPGFVDLDLNDQVTLLKYGVIEVLIIMMAPLMNKDGTLISYGQ
IFMTREFLKSLRKPFCQMMEPKFEFSVKFNTLELDDSDMALFLAVIILSGDRPGLLNVKP
IEQLQETVLHSLELQLKLNHPDSLQLFAKLLQKMTDLRQIVTDHVHLIQLLKKTEVDMCL
HPLLQEIMKDLY
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacaccaggcaaagattttaaccatcaaagtggtcacaacttctcagcagacatg
gtggacacccagcagctcctagcctggcctgtcggtttcagtctgaacgccgtggacctt
tctgagctggatgacagctcccactcccttgacatgaagcatttgtccacattagactac
acccccatctcctccacatccatcccctcctccctgtctcctccacttgtatcttccatc
tcttccattggtgtggcctatgaccccagtccaccgcagagtgaagaacacctgactaac
atggactacacgaacatgcacagctacaggacagagcccaacatgcacaattcaatcaag
ctggagccggagtcgccgcctcagtactctgacagtcccgtgttctccaagctccaggac
gatacgtcagcgacatcactaaacattgaatgccgtgtgtgtggggacaaagcttcgggg
tttcactatggtgtccatgcctgtgagggctgtaagggtttcttcagacgcacaatcagg
ttaaagttggtgtacgatcactgcgaccttcactgtcgtattcacaagaagtctcgcaac
aaatgccaatactgtcggttccagaagtgccttaatgtcggcatgtcacacaacgctatt
cgttttggccgaatgccccaggcggagaaggagaaactgctggctgaggtctcgtctgac
atggagcacatgcacccagaggcagcagatctgagggctctggcccggcatctgtacgag
gcctatctgaaatacttccccctcaccaaggccaaggccagggccatcctctctgggaag
accggagacagcgcgccctttgtcatccatgacatgaagtctctaatggaaggagagcag
tttattaattgcaggcagatgcccatccaggagcaccagcagcagacctccgcccttaca
gccgcacacggagggatcgcaggagttcacatggggccagattgtggcattttgggaacg
acaggcatcagtggacatgaaccaacggacacagtggagcttcgtttcttccacagctgt
cagtcacgctcggccgaggcagtgagagaggtgacagagttcgccaagagtatccccgga
ttcgttgatctggatctaaatgatcaggtaactctgctgaagtatggtgtgatagaggtc
ttgatcatcatgatggcacccctgatgaacaaagacgggaccctgatctcctacggacag
atcttcatgacgcgggagttcctcaagagtctcaggaaacctttctgtcaaatgatggaa
ccaaagtttgagttctccgttaagttcaacacgctggagctggacgacagcgacatggca
ctgtttctggctgtcatcatcctcagcggcgaccgtccaggtcttctgaatgtgaagccc
atcgagcagcttcaggagacagttcttcattcgctggagctgcagctgaagctaaaccac
ccggactctctgcagctgtttgccaagctgctccagaagatgaccgacctgcgtcagatc
gtcacggaccacgtccacctcatccagctgctgaagaagaccgaggtggacatgtgctta
caccctctgctgcaggagatcatgaaggacttgtattag
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