Lates calcarifer (barramundi perch): 108890717
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Entry
108890717 CDS
T04895
Symbol
ddx27
Name
(RefSeq) probable ATP-dependent RNA helicase DDX27 isoform X1
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108890717 (ddx27)
03009 Ribosome biogenesis [BR:
lcf03009
]
108890717 (ddx27)
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108890717 (ddx27)
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108890717 (ddx27)
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
Pre-60S particles
Helicases
108890717 (ddx27)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
108890717
NCBI-ProteinID:
XP_018543222
LinkDB
All DBs
Position
LG12:complement(11292..22792)
Genome browser
AA seq
765 aa
AA seq
DB search
MLEQLGLIGTIRDEDQSPEEPDSESDQEEERIILNRKKKLGSSGSRDFNADFDFGERDVN
HDDDWVMADVIKQLKKKRTVTTLDQKIEKIRKKRKVEEKSAQSENAKGSAEQNHEDDDEE
QDVKPAAGQADGGDEEDDDDEEEDDEDEFDSSDEEILTKSDTLREKEKRGRKRKAQEEAA
ESFYEDASQYDDQLTFDDMNLSRPILKAVTALGFKQPTPIQKACVPVGLLGRDLCACAAT
GTGKTAAFMLPVLERLVYKPRMSQVTRVLVLVPTRELGIQVHSVARQLAQFTSITTCLTV
GGLDLKSQEAALRAGPDVLIATPGRLIDHLHNTPSFELTHIEILILDEADRMLDEYFEEQ
MKEIIRLCSYNRQTMLFSATMTEEVKDLAAVSLKQPIRIFVNSNTDVAPFLRQEFVRIRP
NREGDREAVVAALLTRTFQDHVMLFTQTRKQAHRLHILLGLMGLKVGELHGELSQNQRLE
NLRRFKDEQIDILVATDVAARGLDIDGVKTVINFTMPSTVKHYVHRVGRTARAGRSGRSV
SLVGESERKMLKEVVKSAKNSVKARVLPPEVILKFRDLISKLEKDVEAVTKLEREERELA
ASEAKLSVAQKRLDGSSSESQRVWFQTQQERKQSRMSKALQEFDLALRGKKKREKFLKDG
RKKKELTSEERTQFEILKAQMFAERAAKRERRPKRARVMPEDETPTKAANQKMGKGGKKS
VFDKELTNTSSKALKHYRAGPSFADRKRLGLDRKHPGSSRFKKKK
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacaattgggtctgatcgggacgatccgggacgaggatcagagtccggaggag
cccgacagcgagtccgaccaggaggaggagcggatcatcctgaacaggaagaagaagttg
gggagttcagggtcgagagactttaatgctgactttgattttggagagagggatgtgaac
catgatgacgactgggtgatggctgacgtcatcaaacaactgaagaagaagagaactgtg
acgactctggaccagaaaatagaaaagatcaggaagaaaaggaaagtggaggagaaatca
gctcagagtgaaaatgccaaaggttctgcagagcagaaccatgaggatgatgatgaagag
caggatgtgaagcctgctgcaggacaagctgatggaggtgatgaagaagatgatgatgat
gaggaggaggatgatgaagatgagtttgactcgagtgatgaggaaattctgaccaaatct
gacactctgagagagaaggaaaaacgggggaggaagaggaaggcccaagaggaggctgca
gagtcattctatgaagacgcatctcagtacgacgatcagctgacctttgatgatatgaac
ctgtccaggcccatcttgaaggccgtcacagctctgggcttcaagcagccgactcccatt
cagaaggcctgcgttcctgttggcctgctgggcagagacctctgcgcctgtgccgctaca
gggacaggaaagacggctgcctttatgctgccggtgttggagcgtttggtttataagccc
aggatgtcccaggtgacccgggtcttggttctagtcccgaccagagagttggggatccag
gttcactctgtggcccgtcagcttgcccagttcacctccatcaccacctgcctgactgtt
ggtgggttggacctgaagtctcaggaagcagctttgagggcagggcccgacgttctgatc
gctacacctggtcggctgatcgatcacctccacaacacgccgagcttcgagctcacacac
atagagatcctgatcctggatgaggctgacaggatgttggacgagtactttgaggagcag
atgaaggagatcatcaggttgtgctcctataacagacagaccatgttgttctctgccacc
atgacagaagaggtgaaggacctggcggcagtttcattgaagcagccaatcaggatcttt
gtaaacagcaacactgacgtagctccgttcttgcgacaagagttcgtcagaatccgacca
aacagagaaggagacagagaggctgtggtggctgctctgctgactcggacgttccaggat
cacgtgatgttgttcactcagacgaggaaacaggctcacagactccacatcctgctgggt
ctgatgggactgaaggtcggggaactgcatggagaactgagccagaaccagagattggag
aacctcaggcgttttaaagacgaacagattgatatcttggtggcgacagatgtcgcagcc
agaggtctggacatcgatggagtcaaaacggtgataaacttcaccatgccgtctacagtc
aaacattacgtccaccgtgttggtcggacggcaagagccggtcgttcaggacgttcggtg
tctctggttggagaatctgagagaaagatgctgaaggaggtggtgaagtctgccaagaac
agcgtgaaggcccgagtcctgccgccagaggtgatcctgaagttcagagacctgatctct
aaactcgagaaagacgtcgaagctgtgacgaagctggagagagaggagagagagctggct
gcgtctgaggccaagttgagcgtggctcagaagcgtcttgatggttcatcctcagagtct
cagagagtttggtttcaaactcagcaagagagaaaacagagtcgcatgtcaaaggctctg
caggagtttgatctcgctctcagagggaagaagaagagagaaaagttcctgaaggatggc
aggaagaagaaggagcttacgtctgaggagcgcactcagttcgagatcttgaaggctcag
atgtttgctgagcgggcagccaagagagagagacgaccaaagagagcgagagtgatgccc
gaggacgagacgccgactaaagcagccaatcagaaaatgggaaaaggaggaaagaagtca
gtgtttgataaagagctgaccaacacaagcagcaaggctctgaaacactacagagctgga
ccgtcctttgctgacaggaagcgacttggtttggacaggaagcatccaggcagctccagg
ttcaagaagaagaagtga
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