Lates calcarifer (barramundi perch): 108890757
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Entry
108890757 CDS
T04895
Symbol
si:cabz01101003.1
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase CYLD
KO
K08601
ubiquitin carboxyl-terminal hydrolase CYLD [EC:
3.4.19.12
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04217
Necroptosis
lcf04622
RIG-I-like receptor signaling pathway
lcf04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
108890757 (si:cabz01101003.1)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
108890757 (si:cabz01101003.1)
04625 C-type lectin receptor signaling pathway
108890757 (si:cabz01101003.1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lcf01002
]
108890757 (si:cabz01101003.1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108890757 (si:cabz01101003.1)
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108890757 (si:cabz01101003.1)
Peptidases and inhibitors [BR:
lcf01002
]
Cysteine peptidases
Family C67
108890757 (si:cabz01101003.1)
Ubiquitin system [BR:
lcf04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108890757 (si:cabz01101003.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAP_GLY
UCH
EAD8
Motif
Other DBs
NCBI-GeneID:
108890757
NCBI-ProteinID:
XP_018543269
UniProt:
A0A4W6C7N7
LinkDB
All DBs
Position
LG14:complement(11379541..11387776)
Genome browser
AA seq
980 aa
AA seq
DB search
MSGAHPQTRKRRPLKMFLISTDLKVQDQLEGTIRLQRGFMCQEQDSGNTRGDCPWVKVLD
NGAMVRIERKFLLDIPSDFSGLLEPVSDREARLKLLSNPGKLQQLASLPDEAPLWVQIGQ
QDELAEAELKYIGPLPGGSSAVYFGVQLKGSAAGKGTGNGSYKGHRLFSCPDACALFLPV
SDIRLRHWSSSKGSDAHERPRERDHHRRSDSHPSNGHHSSGSRPNHHQQHGRHISFRQHR
PSSPPQPQAFGILPRTAESAPITAQNQIQVRGPVSPPPFHVGQRVCFPQDDTVHSGEVRF
CGALPGRSSSGMYVGVLLDAPVGNWDGLYKGERLCHIPSSIYGALLPINRVSSEPKSHRH
NPPHHLPRSILKPAPPPFTKPGPASPPVSAPKVALMPPTKQALKPPPLPPPKPTQKAMSP
PPLPPPKPCSPTSPTATEQQLLHTNGVHGPPSPLRSPDYLEAAGENGEAGLEGELEVGSM
VEVNDPPIFGVICWIGRINGINEPVAGIELDQELSAGTDGSYLGERHFRCPANKGLFVKL
RNCRRDSRFPAPETRVNQVERCNSIAFAEWGSERVEEHTPPVDGDQARELYQGWKRGIQG
HLNSCYLDATLFSLFSCCSSADWVLFWPSDPETDQDSSQAQGLLRCEIVNPLRRYGYVCA
SKTMALRRLLEAANSDTGFTNQEKDPEEFLNKLFQLLRVEPLLKIRSMTHEPQECHLYQL
FPPALPPSPSSPSPHSPVDSPIPLSLPSSSRMRVASVQALLESSFLHAGLKFVEAPSCLL
LLMPRFGKDFKMYDAILPTLSLDITDLLDDTLRQCSICQAVAEWECLQCYEDPDITPGHL
KQYCPTCNTQVHSHRKRASHSPVKVGVPGGPWTGSLHCTRQRMSLFAVTCIETSHYVSFV
KHGPLPTDWLFFDSMADREGGENGFNVPRVKACPEVGRYLSLSEEELSRVDAASLQEATR
RLLCDSYMCLYHSPELSLYK
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggggctcatccgcagactaggaagcgacgccccctcaaaatgttcttgatttcg
accgacctcaaggtccaggaccagctggaaggtaccattcggctgcagcgggggttcatg
tgccaggaacaggattcgggcaacaccagaggggactgcccatgggtcaaggtgttagac
aatggtgccatggtaagaatagagaggaagttcctgctggacatcccgagtgacttcagc
ggcctgttggagcctgtatctgatcgggaggctcgcctaaaacttctaagcaatcccggg
aagttgcagcagttggcttctttgccggacgaagctccactgtgggtccaaataggacaa
caggacgagctggcggaggcggagctgaaatacatcgggccgctgcccggagggagcagc
gccgtgtattttggggtacaactgaagggttcagcagcaggtaaaggaacaggcaacggc
tcctataagggccaccggctcttcagctgccctgacgcctgcgccctcttcctcccggtc
agtgacatccggctccgccactggtccagcagcaagggctccgacgctcacgagcgaccg
cgcgagcgagaccaccaccgcaggagcgacagtcaccccagcaacgggcaccacagcagc
ggcagccgcccgaatcaccatcagcagcacggccgtcacatcagcttccgccagcaccgt
cccagcagccctcctcagccgcaggctttcggtatcctccctcgaacggcggagtcggcg
cccatcacagctcaaaaccagatccaagtccgaggccccgtgtcgcctccgccgttccat
gtcggacagcgggtgtgtttcccacaggacgacaccgtccacagcggggaggtgcgcttc
tgtggggccctgcctggccggtcctcgtcagggatgtacgtcggcgtcctgctggacgct
cctgttggaaactgggatggactttacaaaggagagaggctctgtcacattccttcctct
atctatggagcactactgccaatcaacagggtttcctcagagccaaaatcccaccgtcac
aaccctcctcaccacttacccaggtccatcctgaagccagcaccgccccccttcactaaa
ccaggccccgcttcaccacccgtctctgctcccaaggtcgccttgatgcctcccaccaaa
caagcacttaaacctcccccgctgccgccaccgaaacccacccagaaagccatgtctccc
cctcctctcccgcctccaaagccctgcagtccgacgtcacccaccgctacggagcaacag
ctgctgcacaccaacggcgtccacggccctccctccccgctgaggtctccggattacctc
gaagccgcgggggagaacggggaggcgggacttgagggcgagctggaggtgggctcgatg
gtcgaagtgaacgacccgcccatttttggagtcatatgctggattggacgaatcaacggg
atcaatgaaccagtggcaggaattgagctggatcaggagctgtctgcaggaacagacggc
agttacctcggtgaacgtcacttccgctgtccggccaacaaggggctgtttgtcaagctt
cgcaactgtaggagggactccaggttccctgctcctgagacacgcgtcaatcaagtggag
cggtgcaactccatcgcctttgcagagtggggcagtgagcgcgtggaggagcacactcct
cccgtggacggagaccaggccagagagctctaccagggctggaagagaggcatccagggt
cacctcaactcctgctacctggacgctacgctgttcagtctgttctcctgctgtagctca
gcagactgggtgttgttttggccgtctgaccctgaaactgaccaagactccagtcaggct
caaggcctgctgcgctgcgagatagtcaaccctcttcgaaggtacggctacgtgtgcgcc
agtaagaccatggccctgagacgactgctggaggctgccaacagcgacaccggcttcacc
aaccaggagaaagatcctgaagagttcctcaacaagcttttccagctcctccgagtcgag
ccactcctcaagatcagatcgatgactcacgagcctcaggagtgtcacctctaccagctc
ttcccccccgcactccccccttccccgtcctcgccctccccccactcgccggtcgactcc
cccatccctctctccttgccgtcatccagtcggatgagagtcgccagcgtccaggccctg
ctggagtcctccttcctgcacgccggcctcaagtttgtcgaggctccttcctgcctcctg
ctgctcatgcccaggtttgggaaggacttcaaaatgtacgacgccatcttgcccaccctc
agcctggacatcacagacctgctggatgacactctgaggcagtgcagcatctgtcaggct
gtggctgagtgggagtgtctgcagtgctacgaagacccagacatcactccgggtcatctc
aaacagtactgcccaacctgcaacacccaggtccacagtcacaggaagcgagcgtcccac
agccccgtgaaggtcggtgttcccgggggcccgtggactggctctctgcactgcacccgc
cagcgaatgtctctctttgctgtgacgtgcatcgagaccagccattacgtgagcttcgtc
aagcacgggcccctccccaccgactggctgttttttgacagtatggcagaccgggaaggt
ggcgagaacggcttcaacgtcccccgggtgaaggcgtgtcccgaggtgggtcgctacctc
agcctgtcggaggaggagctgagcagagtggacgccgcctcgttacaggaagccacccgc
cgcctgctctgcgactcctacatgtgtctgtaccacagccctgagctcagcctgtacaag
tga
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