Lates calcarifer (barramundi perch): 108890760
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Entry
108890760 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin/ISG15 ligase TRIM25-like
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
108890760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108890760
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108890760
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108890760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_4
zf-B_box
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-RING_5
zf-RING_10
CRISPR_Cas2
Motif
Other DBs
NCBI-GeneID:
108890760
NCBI-ProteinID:
XP_018543274
LinkDB
All DBs
Position
LG14:complement(11271125..11277357)
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AA seq
492 aa
AA seq
DB search
MAAAHSESSVLQEELTCPVCLDLYRDPHLLPCGHNFCKTCLDHLKRQAERGRLRCPECRD
SHRCGTNFQKNFKLANIADDYRHRRRAVSAAATALKSRESLSSSLAAQPVRSVAVPCDYC
PSVAAEEAAAAAAAAPASVAVPMFAVKTCLKCEVSMCQEHVKPHLELPAFCEHPLTDPIN
DFWKRKCLEHDEIYRYYCMDDKMCVCNACTIEGEHSGHTMKTLKNTMKDLKGTLDKQLYR
VDRKYSMAEKKLQEQKEKERQNKKFMDDSEACFNRLEEDMKAKVLSFIIRLRECTRTHCD
TNGPAIQKNIFRICQDQARLQEVRCGIESLMQENDPFRFIEAYKTTGKQCRRQLRKNMFY
PEYVDMETEVLVAIMEEEMKKFLDEELPGHILTAINSLFHLSDLEEEEEENEEEAAEEDD
DDDFDDSSEGEMRSEGEEEEDEEEEDDEDGRDPSELGDDPYSPGEEEEEERSEEEEEDDD
DDDEEDEEERGV
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggcccactcagagtccagcgtcctgcaggaggagcttacctgccccgtgtgt
ctggacttgtaccgtgacccccacttgcttccttgcggacacaacttctgcaagacctgc
ctcgatcacttaaagcgccaagcagagcgaggtcgcctccgctgcccagagtgccgcgac
agccaccggtgtggcaccaactttcagaagaacttcaaactagccaatattgctgatgac
tatcgtcaccggcgcagagccgtcagtgcagctgctacagctttaaaatccagagaatcg
ctgtcgtcttccctggcagcgcagccggtcaggagtgttgctgttccctgtgattactgc
ccctcagtcgccgccgaggaagctgctgctgctgctgctgctgctcctgccagtgtagct
gtgccaatgtttgcggtcaagacgtgcctgaagtgtgaggtgtccatgtgccaggagcac
gtgaagccacatctggagctaccggctttctgtgagcatccactgacagatccgataaac
gacttctggaagaggaagtgtttagagcatgatgagatatacagatactactgcatggat
gacaagatgtgtgtgtgcaacgcctgcaccatagaaggagagcactctggacacacaatg
aagaccctgaagaacacaatgaaagatctcaagggaacgctggataagcagctctacagg
gttgacaggaaatacagcatggctgagaaaaaactccaggagcagaaggagaaggagaga
cagaataagaagttcatggacgactctgaggcgtgcttcaacaggctggaagaagacatg
aaggccaaagtgctcagcttcatcatcagactgcgagagtgcacacgcactcactgtgac
accaacgggccggcgattcagaagaacatcttcaggatctgccaggatcaggcccgtctc
caggaggtccgctgcggcatcgagagcctcatgcaggaaaacgatcctttccgcttcatc
gaggcgtacaagacaacaggaaaacagtgccgtaggcagctaaggaaaaacatgttctac
ccagaatacgtcgacatggagacagaggtcctcgtagcaataatggaagaagaaatgaaa
aaattccttgatgaggaactgccaggtcacattcttactgccattaattccctgtttcat
ctttcagatctcgaggaggaggaagaggagaacgaggaagaggctgcagaggaggacgat
gacgacgacttcgacgacagcagcgagggagaaatgaggagcgagggggaggaggaggaa
gacgaggaggaggaagacgacgaggacggacgtgacccgagcgagctgggcgacgatcct
tacagcccaggggaggaggaggaagaggaacggagcgaggaggaagaagaagacgacgac
gacgatgacgaagaggacgaggaagagagaggggtttaa
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