Lates calcarifer (barramundi perch): 108891318
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Entry
108891318 CDS
T04895
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108891318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108891318
03036 Chromosome and associated proteins [BR:
lcf03036
]
108891318
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108891318
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
108891318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
108891318
NCBI-ProteinID:
XP_018543961
LinkDB
All DBs
Position
Unknown
AA seq
1838 aa
AA seq
DB search
MFNKSFGTPFGGGTGGFGNSSTFGQQNTGFGTTGGFGTSAFGTTSNTGGLFGSTQNKPGG
LFGSSTFSQPATSSTSTGFGFGAASGTSTSLFGNTGTGTSGGLFSQQNNAFGANKPTSFG
SFGTSTSSGGLFGSTNTASNPFGGTNSLFGGSGFSAAQQPGTTVKFNPPTGSDTMVKAGV
TTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPTNQMAAPTGGLFGTATATSSAAT
GLFGSTAPNTSFSFGQNKSTFGATATGGFGATTGGLFGQQTQQPAGSLFKPFGQTTTTQN
TGFSFGNTNTMGQANTSSMGLFGNTAASQSGGLFGAAQTSTATGFGTGTGLFGQTNTGFG
NVGTQQSLFGNKTAGFGTTTTSAPSFGTGTGLFGNKPALTLGTGTNTSTFGFGANPAGGS
LFGNKPATGGLGTGLGTSFGTAVGTGQTSLFGNNQNKLGTTLGTMGTFGATAFNSGTSNL
GFGAPQQPVALTDPNAAAAQQAMLQQQLSILAYSPYGDSPLFRNPLSDPKKKEERLKPTN
PTAQKALTTPTHYKLTPRPATRVRPKALTSSGSSKSQLFDGLDDDEPSLTNGAFIPRKSI
KKLVLKNLNSSQYNSQTETEADDLASPPEYPQNGHSLVEEDEELRELAGPSGRADDDPEV
TQFYVNPIAKPIPQGRAQTSLQDTISDLNMHKPSRNGLELSSDDVSASLGEESLQEDREE
EQQEAQQCPHPAGIVLNRVGYYTIPSMEDLAETVDENGECVVENFTVGRKGYGSIFFPGE
VNVTGLNLDEIVHFRRKEVIVYPDDKNKPPEGEGLNRRAEVTLDGVWPNDKTTCTQIRSP
ERLTDMNYEGRLEKASRKQGARFLEYRPETGSWVFEVAHFSKYGLQDSDEEEDVPPKVDP
KKLKTMMPLPPSRLQQQLPPSQQQVAPQAQSTVVDLPGGVAELDSDMADITQSFPTESML
GGEDDGDFLPGDVDATGGKLGGLISAEHDGISASSHIASTLGINPHTLQIMKASLFAEDE
EEGDMFQDQGAMKVSADVSSPRLVLPGAQGRPSVGGLLQARFTSGLLSQLSDSPRAPLPP
PPLSRASPASFETPRPLHWAGPGPSSFLLPPRTPEPSVRTVGVRRLGGPVPLKESVTLGK
GGLLMDAGLFVGRSFRVGWGPSWTLAHCGQRLSSLPSKQVEHQELTTKTDFSFLPKPARS
KPLVESPYKVVLEQLVGLEPPAAKTIEEEEEESQAVLQRPLEICLEHSTISTTDASACPL
VQPQPGVEALHKYATWIMELNDKQGDADPLLGYWSEVWTLCEALWGRLGPADQEPDVETP
SDYEQQLERRRTFSAWLSRGATCRVEEEVALAGKGRHTEAIFSYLTGNRISEACRLAQKE
GDHRLSLLLSQAMGSQYCRDLLALQLADWNRMQTDCYLPEERLRIFTLLAGKPVWQSSDS
VVNVCSQLDWKRCVAVHLWFMLPPTASVADALAKYEAAFQGSCEGGKYACAPLPPYLEAE
QPDMEEEEEESKRPLYDLCFHLLKLYSDRHYSLQQLLDPLTVTWERLDYRLSWHLWGVLQ
ALHYSHLSASRQGLLHASYAAQLESTGLWHMAVFILLHIPDHTQRERAVREMLTLHCPLQ
ATDDSVRRERFLTERLLIPEQWIHEAKATRARRDGDRHQEALHLYRAGYWSQCHRLLIQH
LASDCIINDNHDYLREFLEGLAAPDRSATIQDWDTAGRVYLDYIRVIKTLQDIQQMENAG
YELERLYTDVTSLCSRIELLPCSTARDRLAQSEMAKRVANILRVVLSLQQGDAASESLSI
PLAQLAPHITRLPMPEDYTLEELRGLTQSYLRQLIVSQ
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcgtttggtactcccttcggtggagggacgggagggtttgggaactcg
tcgacgtttggacagcagaacacaggttttgggacgaccggaggctttgggacgtctgcg
tttgggacgaccagcaacaccggaggactgtttggttccacacagaacaaacctggcggt
ctgttcggctccagtacgttcagccagccggcgacgtcctctaccagcactggcttcggt
tttggcgcggcgagcggcacgtccaccagcctgtttgggaacaccgggacgggcaccagc
ggcggactcttctcccagcagaacaatgccttcggtgccaacaaacccacgtcgtttgga
agcttcgggacgagcaccagcagcggcggcctgtttggttcgacgaacaccgcctcaaat
ccgttcggtggaacaaactccctctttggaggctcgggcttttctgctgcacagcagcca
gggacaaccgtgaaattcaaccctccaacaggaagtgacacaatggtgaaagctggtgtg
acgacgagcatcaacaccaagcaccagtgcatcacagccatgaaggagtatgagaacaaa
tccctggaggagttgagactggaggactaccaggcgggcaggaagggcccaaccaaccag
atggctgcaccgactggtggcctgtttggcacagccacagccacatccagcgccgccacc
ggcctgtttggttccacagctcccaacaccagcttctccttcggacagaacaagagcacc
ttcggagcgacagcgaccggtggttttggtgccaccacaggcggtctgtttggtcagcag
acccagcaaccagccggcagcctcttcaagccgttcggtcagaccaccaccacgcagaac
accggcttctccttcggcaacactaacaccatgggacaggccaacaccagcagcatgggt
ttgtttgggaacacagcagcgtcccagtcgggcgggttgtttggcgccgctcagaccagc
accgccaccggctttgggacaggcactggactgtttggccagaccaacaccggatttggg
aatgttggcacacagcagagtttgttcggtaataagacggccgggttcggcaccaccacc
accagcgctccgtccttcggcaccggcaccgggctgtttggcaacaagccggccctcaca
ctgggaactggaaccaacacctccaccttcggttttggtgcaaaccctgctggagggagt
ctgtttgggaacaagccggccactggaggactggggaccggattgggaaccagctttgga
acagcagtgggcacaggacaaacgtctctgtttgggaataaccagaacaaactgggcaca
acactgggaacaatgggaacgtttggagcgactgcgttcaacagtggaaccagtaacctg
ggcttcggagctccgcagcagcccgtcgcgctcaccgacccgaacgcagcggccgctcag
caggccatgctccagcagcagctcagcatcctggcgtattcgccgtacggagactcgccg
ctgttcagaaacccgctgtcagaccccaagaagaaagaggagcgtctgaaaccgaccaat
ccgacggcccagaaagctctaaccacgcccacccactacaagctgacccctcgacctgcg
accagggtccgcccaaaggcgctgacatcgtccggatcctccaagtctcagctgttcgac
ggcctcgacgatgacgagccctcgctcaccaacggagccttcatacccaggaaaagcatc
aagaaactggtgctgaagaacctgaacagttctcagtacaacagtcagacagagactgaa
gcagacgacctcgcctcacctccagagtatccacagaacggacacagcctcgtggaggag
gacgaggagctgagggagctggcgggccccagcggccgggccgacgacgacccagaggtc
acccagttctacgtcaaccccatcgccaagccgatcccgcagggccgtgcccagaccagc
ctgcaggacaccatcagtgacctcaacatgcacaaaccgtccaggaacggcctggagctg
agcagcgatgacgtgtcggcctctctgggggaggagtctctgcaggaggaccgagaggag
gagcagcaggaggctcaacagtgtcctcaccctgcaggcatcgtcctgaatcgtgttggt
tactacaccatcccctccatggaggatctggctgagacggtggacgagaatggagagtgt
gtggtggagaacttcactgtcggcaggaaaggctacggctccatcttcttccccggcgag
gtgaacgtgacggggctgaacctcgatgagattgtccacttcagacgcaaggaggtcatc
gtgtacccggacgacaaaaacaagccgccggagggggaggggcttaaccgacgagcggag
gtgactctggacggcgtctggccaaacgacaagacgacctgcacccagatcaggagcccc
gagcgcctgacggacatgaactacgagggtcggctggagaaagcctcgcgcaaacagggc
gcccgtttcctggagtacagaccagagaccggatcctgggtgtttgaggtcgcccatttc
tccaaatatggcctccaggactcggacgaggaggaggacgtcccgcctaaagtcgacccc
aagaaactgaagacgatgatgccgctccctccctccaggctgcagcagcaacttcccccc
tcccagcagcaggtggcgccacaggctcagtccaccgtcgtggatcttcccggcggcgtg
gcggagctggacagcgacatggccgacatcacccagagtttcccgacagagagcatgctg
ggaggagaggacgacggcgacttcctgccgggggacgtggatgcgacgggcgggaagctc
ggaggtctgatctccgccgagcacgacggcatctctgcctccagccacatagcgtcgaca
ctggggatcaacccgcacaccctccagatcatgaaggcgtctctgttcgcggaggacgag
gaggagggcgacatgtttcaggatcagggagcgatgaaggtctccgctgacgtctcgtct
cctcgcctcgtcctgccgggagctcagggccgaccctccgtgggaggtctcctccaggct
cgttttacctccggcctcctctctcagctctcagactctcctcgtgctcctcttcctcct
cctcctctgtcgcgagcatctccggcgtcgttcgaaaccccccggccgttacactgggcg
gggcccggcccctcctccttcctgctgccccctcgaactccagagccttcggtcaggaca
gttggcgtccggcggctcggcgggcctgtccccctcaaagagtcggtcactctggggaag
ggaggtctgttgatggacgccgggctgtttgtgggtcgctccttcagggttgggtggggt
cccagctggacgctggcgcactgcggccaacggctgagttcactgccctccaaacaggtc
gaacaccaagagctgacgactaagaccgacttcagcttcctgccaaaacctgccaggagc
aaacctctggtagaaagcccctataaggtggtgctggagcagctggtgggtctggaacct
cctgcagcgaagaccatcgaggaagaggaggaggagagccaggcggtgctgcagcgcccc
ctggagatctgcctggagcacagcaccatcagcaccacagacgcctctgcctgccctctg
gtccaaccgcagcccggcgtcgaggcgctgcacaaatacgccacgtggatcatggagctg
aacgacaagcagggtgacgcagaccctttgctcggatactggtctgaggtctggaccctg
tgtgaggctctgtggggtcggctgggccccgcagaccaggagccagacgtggagacgccc
agtgactacgagcagcagttggagcggaggcggaccttctcggcgtggttgtcccgcggc
gccacctgtagggtggaggaggaggtggctctggcagggaagggtcgccacacggaggcc
atcttcagctacctgacgggcaaccgaatcagcgaggcgtgtcgacttgcacagaaggaa
ggagaccaccgtctgtccctgctgctgtcccaggccatgggttctcagtactgccgggac
ctgctggccctccagctcgccgactggaaccgcatgcagaccgactgctacctgccagag
gaacgactgcgcatcttcacgctgctcgcagggaaaccggtgtggcagtcgtctgactcc
gtggtgaacgtgtgctctcagctggactggaaacggtgcgtcgccgtccacctctggttc
atgttgcctccgactgcctcggtggccgatgcccttgccaaatacgaagccgccttccag
ggctcctgtgagggggggaagtatgcctgtgcccccctgcctccgtacctggaggcggag
cagccagacatggaggaggaggaggaggagtccaaacggccgctgtacgacctctgcttc
cacctgctcaaactctacagtgacagacactacagcctgcagcagctgttggaccctctg
accgtcacctgggagcgtctggattaccgtctgagctggcacctgtggggcgtcctgcag
gcgctgcactacagccacctgagcgcctcgcggcagggactcctccacgccagctacgcc
gctcagctggagagcaccggcctctggcacatggccgtcttcatcctgctgcacatccct
gaccacactcagcgggagcgagcggtcagggagatgttgacgctccactgccccctgcag
gctacggacgactcggtccggagggagcgcttcctgaccgagaggctgctgatcccggag
cagtggatccacgaggccaaggccacccgggcccggcgagacggcgacagacaccaggag
gccctgcacctgtaccgggccggatactggagccagtgtcaccggctgctgatccaacat
ctggcctcagactgcatcatcaacgacaaccacgactacctccgggagttcctggaggga
cttgcggcccctgaccgcagcgccaccatccaggactgggacacggcagggagggtttac
ctggactacatcagggtcataaagactctgcaggacatccagcagatggaaaatgccggt
tacgagctggagcgtctctacaccgacgtgacgtcgctctgcagcagaatcgaacttctg
ccctgcagcacggccagagaccgcctcgcccaatcagagatggcgaagcgtgtggccaat
atcctgcgcgtggtgctgagcctgcagcagggcgacgcggcgtccgagtccctcagcatc
ccgctcgcccagctggcgccgcacatcacccgcctgccgatgccggaggactacacgctg
gaggagctgcgaggcctcactcagtcgtacctgaggcagctcatcgtcagccaatga
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integrated database retrieval system
