Lates calcarifer (barramundi perch): 108891570
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Entry
108891570 CDS
T04895
Symbol
sox11b
Name
(RefSeq) transcription factor SOX-11b
KO
K09268
transcription factor SOX11/12 (SOX group C)
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108891570 (sox11b)
Transcription factors [BR:
lcf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108891570 (sox11b)
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
NOA36
Autophagy_act_C
RXT2_N
AFF4_CHD
Motif
Other DBs
NCBI-GeneID:
108891570
NCBI-ProteinID:
XP_018544262
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Position
LG7_1:complement(559023..561431)
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AA seq
399 aa
AA seq
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MVQHTEHGGTGINTGSRQATDPEENELLTASACSPVPLKPDWCKTASGHIKRPMNAFMVW
SKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDTEKIPFIREAERLRLKHMADYPDYKYR
PKKKPKTDGCAFPAGKPAAQSPEKTGVRPVNKNPAAAKKFSKLKPSKPVVGPGRASSHLP
QHQHHQHADPRYRYVLTTSFKTSKLVKREFTDDEEEEDDDDDDDEDSEEEREFKAEEEDE
PSGYSLAKVPAAEPDGTGMYESSGRLFYSFKNITRQGTGTPSSYPPSLSPASSSRSGSTS
SSSCCGEDLDDLPAEGSDFTLSLLAGFHHASSEPWNSSSSSAPGNLSLSLVDKDLDSCGS
SEGSLGSHFEFPDYCTPELSEMIAGDWLEANFSDLVFTY
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggttcagcacacggagcatggcgggactgggattaacaccgggtcccgccaggcgacc
gacccggaggagaacgagctgctgacggcctcggcgtgcagcccggtgccgctgaagccg
gactggtgcaaaacagcgtcgggtcacattaaacgacccatgaacgccttcatggtgtgg
tccaagatcgagaggaggaagatcatggagcagtcgccggacatgcacaacgcggagatc
tccaagcggctcgggaagcggtggaaaatgttaaaagacaccgagaagatcccgttcatc
cgggaggcggagcggctccggctcaagcacatggccgactacccggactacaagtaccgg
cccaagaagaagcccaagacggacggctgtgcgtttcccgcggggaagccggccgcccag
tccccggagaaaaccggagtcagacccgttaataaaaaccccgccgccgccaagaaattc
tccaagttgaaacccagcaaaccggtggtcggtcccggcagagcgagcagccacctcccg
cagcaccagcaccaccagcacgccgacccccggtaccggtacgtgttgaccaccagcttt
aaaaccagcaagctcgttaaacgggagtttaccgacgacgaggaggaggaggacgacgac
gacgacgacgatgaagactccgaggaggagcgggagttcaaggcggaggaggaggacgag
ccgtccggctacagcctcgccaaggtcccggccgccgaaccggacggaaccggcatgtac
gagtcgtccggtcggctcttctacagcttcaagaacatcacccggcagggcaccggcacc
ccctcctcctacccgccctccctctctcccgcatcctcgtcccggtccggctccacctcc
tcctcctcctgctgcggggaggacctggacgacctccccgccgagggcagcgacttcacc
ctgagcctcctggccggcttccaccacgcctcctccgagccctggaactcgtcgtccagc
tcggccccggggaacctgagcctgtccctggtggataaagacttggactcgtgcggcagc
agcgagggcagcctcgggtcccacttcgagttcccggattactgcaccccggagctcagc
gagatgatcgccggggactggctggaggccaacttctcagacctggtcttcacttactga
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