Lates calcarifer (barramundi perch): 108893634
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Entry
108893634 CDS
T04895
Symbol
vtnb
Name
(RefSeq) vitronectin b
KO
K06251
vitronectin
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108893634 (vtnb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108893634 (vtnb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108893634 (vtnb)
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108893634 (vtnb)
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108893634 (vtnb)
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108893634 (vtnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hemopexin
Somatomedin_B
Motif
Other DBs
NCBI-GeneID:
108893634
NCBI-ProteinID:
XP_018547331
UniProt:
A0A4W6F647
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Position
LG20:complement(19911996..19917738)
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AA seq
439 aa
AA seq
DB search
MKPAVALLGLVLLLDTTFAAEKSCAGRCGSFDPQSKCQCDSMCVYYGSCCEDFDTVCPKK
VARGDTFEEGEDVTVTATTPATTVAPTFNTAASLPFSTIPGPTPADPDAASCSGRPFDAF
LQLKNGSTYAFRGEYFFELDDKSILPGYPKLIQDVWGIKGPIDAAFTRINCQGKSYIFKG
NKYWRFDGDVLDEDYPRDISVGFDGIPDDINAAFAVPAPSHRGREKAYFFKEDKYYQYEF
KHQPSHEECVSMSRSSPSVLFTRYTDLFCDQSWEDLFTELFGSSFSSHDTGPRLISRDWQ
GIRPPVDAAMVGRVYLSPKPTPSSPPPTRRRGSKRRRPSKRRGQRGRQSRSLVFDDLWGF
DDWLDYSDYGTITDESTTPEYTSTPVQNVYFFKRDKYYRVNLQAKRVDTVNPPYPRSIAK
YWLGCKQEATPDESRAEKR
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgaagccagcagtggctctgctgggcctcgtcctgctgctggacacaacctttgctgca
gaaaagtcgtgtgctggtcgctgtggctccttcgatccacagagtaaatgtcagtgtgac
tccatgtgtgtgtactatggaagctgctgtgaagactttgacaccgtctgccccaaaaaa
gttgctcgtggtgacaccttcgaggaaggagaggatgtgacggtaacggcaacaactcct
gctacaactgtcgcgccaacgttcaacacagctgcctctctcccattcagtaccatacct
gggcccacacctgcagaccctgatgcagcgtcctgcagcggtcgaccttttgatgctttt
ctgcagctgaagaatgggtcgacctatgcattcagaggtgaatatttttttgagttggat
gacaagtccattcttcctggttaccccaaactcatccaggatgtgtggggaatcaaagga
cccattgacgccgccttcacacgtatcaactgccagggaaaatcctacatctttaagggg
aacaaatactggaggtttgacggtgacgtcttggatgaggactatccgcgggacatttca
gtcggctttgacggcataccagatgacattaatgctgcattcgctgtgccagcaccaagc
caccgtggcagagagaaagcctactttttcaaagaggacaagtattaccagtatgagttc
aagcaccagccttcccatgaggagtgtgtcagcatgagcaggtcctcgccgtctgtgctg
ttcacgcgatacacagacctgttctgcgaccagtcgtgggaggatctcttcacagagctc
ttcggaagctccttcagcagtcatgacacaggccctcgtctcatcagtagagactggcag
ggcatcaggcctcctgtagatgctgctatggtaggacgagtgtacctcagtcccaagccc
acgccatcctctcctccacccacgaggaggcgcggcagtaagaggaggaggcccagcaag
agacgtggacagcgaggacgccagagtcgctccctggtttttgatgatttgtggggtttt
gacgactggctcgactacagcgactacggcaccatcactgatgagagcaccacaccagag
tacacgagcactcctgttcaaaatgtgtatttcttcaagagagataaatactatagagtc
aatctgcaggcaaaacgtgtggacactgtcaaccctccatacccacgatccattgcaaaa
tactggttgggctgcaagcaagaggcaacacccgatgaatcaagggcagagaagagataa
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