Lates calcarifer (barramundi perch): 108895420
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Entry
108895420 CDS
T04895
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03013
Nucleocytoplasmic transport
lcf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108895420
03015 mRNA surveillance pathway
108895420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108895420
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108895420
mRNA cycle factors
P-body specific factors
108895420
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
108895420
NCBI-ProteinID:
XP_018549751
UniProt:
A0A4W6FTD0
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Position
LG8:16622374..16625776
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AA seq
463 aa
AA seq
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MKEDKENTRPKERKVEIKCEDGEKTEKSKEKKEAMTKIVIRRLPPSLTKEELEEQLQPLP
ELDYMEFFSNDTSLYPHLFARAYINFKNQEDIVLFRDRFDGYVFIDNRGQEYPAIVEFAP
FQKTAKKRSKKKDAKCGTITEDPDYKKFLEYYNGDEEKLTSTPETLLEEIEAKSKELVAK
KTTPLLDFLKNKQRLREEKKEERRRRELERKRLRDEERRKWREEERRKRKEAEKMKRLEK
PLEKDKDHVKEEPKIKLLKKPDRGDDADSEKPKEKAKKTEKPSKEDRSMGSADHKRRQNI
ENKEDRGRKADDDGRKEFRERDADRDREREREREKERRQREKERLRRQDEDRRRRRERQD
GENSGRKREEEVKKEKERAVEKKKGENVGDSAHSERPEKPAKDNRKEESSKRERLRNKDR
PAIQLYQPGARSRNRPTGGGGESNSADRKPDPETKKVADKGDD
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggaaaatactcggccgaaggagagaaaggtggaaataaagtgcgaa
gatggagaaaagacggagaagtccaaggaaaagaaagaggccatgacaaagattgtgatc
agacgattaccaccaagtctgaccaaggaggagctggaggagcagctacagccgctccca
gagctggactacatggagtttttctccaacgacactagcctttacccccacctcttcgca
agagcctacatcaacttcaaaaatcaagaggacatagtcctcttcagagatcgcttcgat
ggatatgtattcatcgacaacagaggacaggagtaccctgccattgttgaatttgcaccc
ttccaaaagactgccaagaaaagaagtaagaaaaaggatgcaaagtgtgggacaataact
gaagatcctgattacaagaagttcctggaatattataatggagatgaagaaaagctgaca
tcaacacctgagaccctgttggaggagattgaggcaaagtcaaaggaacttgtagctaaa
aaaacaactcctctgttggacttcttgaagaataaacagagactcagggaggaaaagaaa
gaggagagaaggaggagggagcttgaacgcaagcgtctgcgggacgaggagcgccgtaag
tggagggaggaggagagaaggaagcgcaaggaggccgagaagatgaagagacttgagaag
cccctggagaaagacaaggaccatgttaaagaagaaccaaaaattaagctcctgaagaag
ccagacagaggtgatgatgctgattctgagaagcccaaagaaaaggccaaaaaaacagag
aagccaagtaaagaagacagatccatggggagtgctgatcataagaggcgtcagaacatt
gaaaacaaggaggatcgaggaaggaaagcggatgacgacgggcggaaggagttcagggag
cgtgacgcagatcgcgacagagagcgcgaaagagaacgggagaaggagcggcggcagaga
gagaaggagcgcctcaggcgacaggatgaagaccggcggagacggagggagcgccaggat
ggagaaaactcgggcaggaagcgggaggaggaggtgaagaaagaaaaagagcgtgctgtg
gagaagaaaaagggtgaaaacgttggagactccgctcactctgagaggccggagaagcct
gccaaagacaacaggaaggaggagagtagcaaaagagagcggctacgaaataaagaccgg
cctgctattcagctgtaccagccaggggccaggagccgcaaccgacctacaggaggagga
ggcgaatccaactctgctgacaggaagccagatcctgagaccaagaaagtagctgacaaa
ggagacgactga
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