Lates calcarifer (barramundi perch): 108895526
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Entry
108895526 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: UV-stimulated scaffold protein A
KO
K23720
UV-stimulated scaffold protein A
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
108895526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108895526
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
108895526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
Motif
Other DBs
NCBI-GeneID:
108895526
NCBI-ProteinID:
XP_018549908
LinkDB
All DBs
Position
LG8:complement(1282704..1317494)
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AA seq
753 aa
AA seq
DB search
MELSQRERLSELVEQLTTSGQPQLNQDKMKEIKKICRVSNDCVDHLYHLVMNQLNQEHCE
IRLSAFQIASELFSRSHHFRTLLVDNFQEFLELTVETDSEQPLPPPKEVARKLRSLAIQT
VQSWQASYGTSYKKLALGYHFLKQVKKVDFQDAEARTVAERRREEERQRRMERIYKERVE
AASRDMEESYQEIEATLTEMESCMNLLFPEFSLIDIQPVNGCSSNSQPTNGCPSDDEQPC
CSKDVRDNRKGEESREEKRTGEVGEEDKGMQETRKDQGEGKEEEEEEDMEEEEGSSEDKE
EERFDGDMFIRNSGLISHSYSLDLNISPGLQVKETEDNEAVVSTVRDLHRLITTKHLPAV
QGWVQVFTKAGAEEQLVRRALDLKRSLEAALQKHEELHIDYKTRVRKVMKASSNGEEDDD
DDDGDDDFDDVPEKEGYEPHIPEHLRAEYGLDPSPSTSAAPVTRKPPAKRPAAPPPRSSS
SSSSSTSRRLKRIIEEEQDPTCAAATLRLIRQNLPLPAESSSSSSSDPASSQSSSDQKPA
DAPVVPFGLDLYYWGQEQPNAGKIIKAASQHQFWVPIEVEEEVENEQLLAESKSRYISFP
GRFTPVSHYCRAPLGNGKLCQRQDRLKCPFHGQIVPRDQEGRPCRQEDRLREEQEERRKR
EEQPDWRDAELMRDIEAATGENLGSDRVGKKGKGKKKKFPNLSDLKQSANTSRCRLEKKV
FNKSAMRRVAQVMAKADRRKHDKFSNQFNYSLN
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggagttgtctcagagggagcggctgtcagagctggtggagcagctgaccacatcagga
cagccacagctcaaccaggacaagatgaaggaaatcaagaagatctgcagagtgtctaat
gactgcgtagaccacctgtaccacttagtgatgaaccagctcaaccaagaacattgtgag
atacgactgtcagccttccagatagccagtgagctcttctccaggtcacaccacttcagg
acgctgctggtagacaacttccaggagttcttggagctgacagtggagactgactcagag
cagcccctccctcctcctaaagaagtagccaggaagctgaggtccctggccatccagact
gtccagtcatggcaggcctcttatgggacttcgtataagaagttggcactgggctaccac
ttcctcaaacaggttaagaaggtggatttccaggatgctgaggccaggacggtagcagag
aggaggagggaggaggagagacaaaggagaatggagaggatctacaaggagagagtggag
gcagcttccagagacatggaggagtcgtaccaggaaattgaggcgacgctgacagagatg
gaatcctgtatgaatctgcttttccctgagttcagcctcatagacatccagccagtcaac
ggctgttcttcaaactcccagccaaccaacggatgtccgtcagatgatgaacagccctgc
tgcagcaaggacgtgagggataacaggaaaggggaggagagcagggaagaaaagagaaca
ggagaggtgggagaagaagacaaaggaatgcaagagactaggaaagatcagggggaggga
aaggaggaagaggaggaagaagacatggaagaggaggagggaagtagtgaagacaaggaa
gaggagcggtttgatggagacatgttcattcggaactcagggctcatctctcactcctac
agtctggacctgaacatcagtcctggtcttcaggtgaaggaaacggaggataacgaggca
gtggtttccacagtgagagacctccatagactgataacaaccaaacacctgccagctgtg
cagggctgggttcaggtcttcaccaaggcaggtgcagaggagcagctggtgaggagagca
ctggatctgaagagatctttagaagctgcactgcaaaaacacgaagagcttcacattgac
tataagaccagggtgcgaaaagtgatgaaggcttcttcaaatggagaggaagatgatgat
gatgacgatggcgacgatgatttcgatgacgttccagagaaagaaggatatgagccacac
attccagagcatttacgagctgagtacggtttggatccctctccttccacctcagcagca
cctgtcacaaggaaacctcctgctaaacgacctgcagctccaccccctcgttcttcctcc
tcctcctcctcctctacttccaggcgtctgaagcggatcatagaagaggagcaggatcca
acctgtgcagctgcaacactgcgcctcatcagacagaacctccctctgcctgcagagtcc
agcagcagcagctcctcagaccccgcttcatctcaatccagttcagaccagaagcctgct
gatgctcctgtggtcccatttggtttggacctgtactactggggccaggagcagcccaat
gctggcaagatcatcaaggcggcctctcagcatcagttctgggttcccatcgaggtggag
gaagaggtggagaatgagcagttgctggcagagagcaagagcagatacatctccttccct
ggaagattcactcctgtcagccattactgtagagctccactaggcaacggaaagctgtgt
cagagacaggatcggctcaagtgtcctttccatggccagatcgttcctcgagaccaggag
ggtcgaccctgcaggcaggaggaccgactgagggaggagcaggaggagaggaggaagagg
gaggagcagcctgactggcgtgatgcagagctgatgcgagacattgaggcggcaacagga
gaaaacctgggttctgacagagtgggtaaaaaaggaaaagggaagaagaagaagttcccc
aacctcagtgatctgaagcagagcgccaacacgtcccgctgcaggctcgagaagaaagtc
ttcaacaagagcgccatgcgcagagtagctcaggtgatggctaaagctgacagaagaaaa
cacgacaagttctccaaccagttcaactactctctcaactga
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