KEGG   Lates calcarifer (barramundi perch): 108896160
Entry
108896160         CDS       T04895                                 
Name
(RefSeq) pinin
  KO
K13114  pinin
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03013  Nucleocytoplasmic transport
lcf03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108896160
   03015 mRNA surveillance pathway
    108896160
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcf03019]
    108896160
   03041 Spliceosome [BR:lcf03041]
    108896160
Messenger RNA biogenesis [BR:lcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     108896160
Spliceosome [BR:lcf03041]
 Complex C
  Other components
   EJC/TREX
    108896160
SSDB
Motif
Pfam: Pinin_SDK_N Pinin_SDK_memA
Other DBs
NCBI-GeneID: 108896160
NCBI-ProteinID: XP_018550702
UniProt: A0A4W6FLH6
LinkDB
Position
LG19:complement(5653647..5659116)
AA seq 689 aa
MAVVVRSLQDQLEKAKESLKNVDDNIRKLTGRDPNESRPGQIRRLGGPMAGVGGGRGRGI
NLLRRSLSDIGSGGPPAKQRDIEGALLRLAGDQRARRDARHDSDAEDDDDVKKPALQSSV
VATSKERTRRDLIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESNVSSEKQKRRSEIEQK
LEVQAEAERKKVENEKRELFEERRAKQTELRLLEQKVELAQLQEEWTSHNNRLVKYIRTK
TKPHIFYLPGKMCSATQKLLEDSTKKLNAVFEERREAFAEHLSKMESRPRRQPNRDQDGN
TAATGTDHPAEGKPAGQVVKVTGNKGNAEMEEEDEEEEEEEERERGKEGDRKVTEKDEGE
EREEEEMEGLKKADEEEERMEFSEEGSEEKKEREEGMKGREDQREKEDKEASPGSEEMEV
EQEDGRKEEVAETDSKQGPADLQNEKTQDIQSSEPTITSHEAPDTSQQPQASPTVGEPAV
QSFETQGASPTPEPQTASAAPGHDFIIPGLEFQESAGENQATEGKSGDEAPHKLPGSQEA
PSTTPAPSKEDEDSGRGRKKEKEPRKGRSHSNSSSSSSSGSSSSGSSSSSSGSSHSSSSS
SSSSSSSSNSSSRSRSRDSGKRKRRPSDRDRDRKKGEDRSHRKRGGSSGGGRDSKGSKER
RKRRSDEGRGRSSRSSREHKDRDRKDKRR
NT seq 2070 nt   +upstreamnt  +downstreamnt
atggcggtggtggtgcggagcttgcaagaccagctcgaaaaagccaaggaaagcttaaaa
aatgtggacgataatattcgcaaattaaccggacgtgatcctaatgagtccaggccgggc
cagatccgtcggctcggcggccccatggcaggcgttggaggaggtagaggcagaggaatc
aacctgctcaggcgtagtctctcagatattggaagcggcggcccccctgccaagcagagg
gacatcgagggagccctgctgaggctggcgggggaccagagggccaggagagatgcgcgt
cacgacagcgacgccgaggatgatgacgatgtcaaaaagccggcgttgcagtcgtctgta
gtagctacctccaaggagcgaacacgccgagacctcattcaagatcaaaccatggatgag
aagggcaaacagaggaatcggcgtatgttcggcctgctgatggggaccctgcagaaattc
aaacaggagtcaaacgtctcttcagagaagcaaaagcgacgttcagagattgagcagaag
cttgaggttcaggctgaggcagaaagaaagaaggtggagaatgaaaagagggagctgttt
gaagagaggagagccaaacagactgagctgagactactggaacagaaagtcgaactagct
cagctgcaagaggagtggaccagccacaataatcgtctggtgaaatacattcgcactaag
acaaagcctcatatcttctatttgcctgggaaaatgtgctccgcaactcagaaactcctc
gaagactccaccaagaaactaaatgctgtgtttgaggagaggcgtgaggcttttgccgaa
cacctcagcaagatggagtcccgcccccggcgacagcctaaccgcgaccaggatggaaac
acagcggcaacagggacggaccacccagcggagggtaagccagcaggtcaggtagtcaag
gtgacaggtaacaaggggaatgcagagatggaggaagaagatgaagaggaggaggaggag
gaggagagggagaggggaaaggagggggatagaaaggtgacagagaaggatgagggtgag
gagagggaggaagaggagatggaagggttaaagaaggcagatgaagaggaggagaggatg
gagttcagtgaggaaggtagcgaggagaagaaggagagagaggaggggatgaagggcaga
gaggatcaaagagaaaaggaagacaaagaggcaagtccagggtcagaggagatggaggtt
gagcaggaagatgggagaaaggaagaggtggcagaaacagacagtaaacaggggcccgca
gacctccaaaatgaaaagacccaagacatccagtcctctgaaccaaccataaccagccat
gaagcaccagacaccagtcagcagccccaggccagtcccactgtaggggaaccagcagtg
cagtcctttgagacccagggggcctctcctaccccagaaccacaaaccgcctccgctgca
cctgggcacgatttcatcatccctggccttgagttccaagaatcagcaggcgagaaccag
gccacagaggggaaatcaggggacgaagccccacacaaactgcctggttcccaggaggcc
cccagcactacccctgcaccctccaaggaggatgaggacagtgggagaggaaggaagaag
gagaaggagccaaggaagggccgcagtcatagcaacagctcctcctcttcctcttcaggc
tcatcctccagcggaagttcctcctcttcctccggatccagccactcttcttcatcatcg
tcatcctcttcatcctcgtcgtccaacagcagcagccgaagccgcagccgagacagcggg
aagcgcaagagaaggccctcagacagagacagggacaggaagaaaggagaagaccgaagt
catcggaagagaggagggagtagcggaggaggaagggactcgaagggatcgaaagagagg
aggaagaggaggagcgatgagggaagaggcaggtcgtcccggagcagtagggagcataaa
gatagagacaggaaggacaagagacgctaa

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