Lates calcarifer (barramundi perch): 108896160
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Entry
108896160 CDS
T04895
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03013
Nucleocytoplasmic transport
lcf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108896160
03015 mRNA surveillance pathway
108896160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108896160
03041 Spliceosome [BR:
lcf03041
]
108896160
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108896160
Spliceosome [BR:
lcf03041
]
Complex C
Other components
EJC/TREX
108896160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
108896160
NCBI-ProteinID:
XP_018550702
UniProt:
A0A4W6FLH6
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Position
LG19:complement(5653647..5659116)
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AA seq
689 aa
AA seq
DB search
MAVVVRSLQDQLEKAKESLKNVDDNIRKLTGRDPNESRPGQIRRLGGPMAGVGGGRGRGI
NLLRRSLSDIGSGGPPAKQRDIEGALLRLAGDQRARRDARHDSDAEDDDDVKKPALQSSV
VATSKERTRRDLIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESNVSSEKQKRRSEIEQK
LEVQAEAERKKVENEKRELFEERRAKQTELRLLEQKVELAQLQEEWTSHNNRLVKYIRTK
TKPHIFYLPGKMCSATQKLLEDSTKKLNAVFEERREAFAEHLSKMESRPRRQPNRDQDGN
TAATGTDHPAEGKPAGQVVKVTGNKGNAEMEEEDEEEEEEEERERGKEGDRKVTEKDEGE
EREEEEMEGLKKADEEEERMEFSEEGSEEKKEREEGMKGREDQREKEDKEASPGSEEMEV
EQEDGRKEEVAETDSKQGPADLQNEKTQDIQSSEPTITSHEAPDTSQQPQASPTVGEPAV
QSFETQGASPTPEPQTASAAPGHDFIIPGLEFQESAGENQATEGKSGDEAPHKLPGSQEA
PSTTPAPSKEDEDSGRGRKKEKEPRKGRSHSNSSSSSSSGSSSSGSSSSSSGSSHSSSSS
SSSSSSSSNSSSRSRSRDSGKRKRRPSDRDRDRKKGEDRSHRKRGGSSGGGRDSKGSKER
RKRRSDEGRGRSSRSSREHKDRDRKDKRR
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggtggtgcggagcttgcaagaccagctcgaaaaagccaaggaaagcttaaaa
aatgtggacgataatattcgcaaattaaccggacgtgatcctaatgagtccaggccgggc
cagatccgtcggctcggcggccccatggcaggcgttggaggaggtagaggcagaggaatc
aacctgctcaggcgtagtctctcagatattggaagcggcggcccccctgccaagcagagg
gacatcgagggagccctgctgaggctggcgggggaccagagggccaggagagatgcgcgt
cacgacagcgacgccgaggatgatgacgatgtcaaaaagccggcgttgcagtcgtctgta
gtagctacctccaaggagcgaacacgccgagacctcattcaagatcaaaccatggatgag
aagggcaaacagaggaatcggcgtatgttcggcctgctgatggggaccctgcagaaattc
aaacaggagtcaaacgtctcttcagagaagcaaaagcgacgttcagagattgagcagaag
cttgaggttcaggctgaggcagaaagaaagaaggtggagaatgaaaagagggagctgttt
gaagagaggagagccaaacagactgagctgagactactggaacagaaagtcgaactagct
cagctgcaagaggagtggaccagccacaataatcgtctggtgaaatacattcgcactaag
acaaagcctcatatcttctatttgcctgggaaaatgtgctccgcaactcagaaactcctc
gaagactccaccaagaaactaaatgctgtgtttgaggagaggcgtgaggcttttgccgaa
cacctcagcaagatggagtcccgcccccggcgacagcctaaccgcgaccaggatggaaac
acagcggcaacagggacggaccacccagcggagggtaagccagcaggtcaggtagtcaag
gtgacaggtaacaaggggaatgcagagatggaggaagaagatgaagaggaggaggaggag
gaggagagggagaggggaaaggagggggatagaaaggtgacagagaaggatgagggtgag
gagagggaggaagaggagatggaagggttaaagaaggcagatgaagaggaggagaggatg
gagttcagtgaggaaggtagcgaggagaagaaggagagagaggaggggatgaagggcaga
gaggatcaaagagaaaaggaagacaaagaggcaagtccagggtcagaggagatggaggtt
gagcaggaagatgggagaaaggaagaggtggcagaaacagacagtaaacaggggcccgca
gacctccaaaatgaaaagacccaagacatccagtcctctgaaccaaccataaccagccat
gaagcaccagacaccagtcagcagccccaggccagtcccactgtaggggaaccagcagtg
cagtcctttgagacccagggggcctctcctaccccagaaccacaaaccgcctccgctgca
cctgggcacgatttcatcatccctggccttgagttccaagaatcagcaggcgagaaccag
gccacagaggggaaatcaggggacgaagccccacacaaactgcctggttcccaggaggcc
cccagcactacccctgcaccctccaaggaggatgaggacagtgggagaggaaggaagaag
gagaaggagccaaggaagggccgcagtcatagcaacagctcctcctcttcctcttcaggc
tcatcctccagcggaagttcctcctcttcctccggatccagccactcttcttcatcatcg
tcatcctcttcatcctcgtcgtccaacagcagcagccgaagccgcagccgagacagcggg
aagcgcaagagaaggccctcagacagagacagggacaggaagaaaggagaagaccgaagt
catcggaagagaggagggagtagcggaggaggaagggactcgaagggatcgaaagagagg
aggaagaggaggagcgatgagggaagaggcaggtcgtcccggagcagtagggagcataaa
gatagagacaggaaggacaagagacgctaa
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integrated database retrieval system