Lates calcarifer (barramundi perch): 108896519
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Entry
108896519 CDS
T04895
Symbol
si:ch73-61d6.3
Name
(RefSeq) occludin isoform X2
KO
K06088
occludin
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04514
Cell adhesion molecules
lcf04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108896519 (si:ch73-61d6.3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
108896519 (si:ch73-61d6.3)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108896519 (si:ch73-61d6.3)
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108896519 (si:ch73-61d6.3)
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Gene cluster
GFIT
Motif
Pfam:
Occludin_ELL
MARVEL
DASH_Dad2
DASH_Dad1
FapA
AAA_23
Motif
Other DBs
NCBI-GeneID:
108896519
NCBI-ProteinID:
XP_018551205
UniProt:
A0A4W6CS86
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Position
LG17:complement(19548836..19567437)
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AA seq
544 aa
AA seq
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MFDKQHYESPPVYSPPFTPPSNNGFGPPGSFHGPQSDYNAYPPPPGSYYIEDRPQHFYKW
LSPPGIIKAMMAVVIVLCVAIFACVASTLMWDYQYGYMGMGYYGSGMGYGSGYGGSYGSG
YGGYGGYGGYGNYYGSYISPYSAKTAMIAMAAINFIGALAFFIASFSKSNMVRTRKFFLA
LLITSIIMAVLQGIINIVYIVGVNPMAQSSSSMMYNPMLMMCQNLYQTSYSQMGGVGGFP
MYNQYLYHYCFVDPQEGVAMVCGFLVVIALGVAAFFAHRTRGKIWRYGKPNIYWEEPLVG
GKASEGRDVEEWVNNVEESRSVQDAPTLLVSEKGGGLLNASANSVISYPPAKVDSSSYNG
DTFDNNEYSERTTSRPSEVFSHGGGTSSSPSEETGGGRKPSANRGKRRRRNPELDESQYE
TEYTTGGETGNELDTEEWESMYPEITSDAQRHDYKREFDADLKEYKRLCADMDDINDQMN
KLSRQLDTLDDTSAKYQAVAEEYNQLKDLKQTSDYQSKKRECRRLRHKLFHIKRMVKEYD
RNHS
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacaaacagcactacgagagtccgcctgtttacagccctccgttcacccctcca
tccaacaacggctttggccctccaggcagcttccatggccctcagagcgattacaacgcg
tatccgcctccgccgggatcttactacattgaggacagaccgcagcacttctacaaatgg
ctgtcgccccctgggatcatcaaggccatgatggctgtggtgatagtgctgtgcgtggcg
atatttgcctgcgtggcctccactctcatgtgggactaccagtacggatacatgggaatg
ggttactatggttccgggatgggctacggcagtggatacgggggcagctacggctcggga
tacggaggttatgggggttatggaggctatggcaactactatggctcctacatctcaccc
tactcagccaaaactgccatgattgccatggcagctattaacttcataggagcgctggcg
ttcttcatcgccagcttctctaaatccaacatggtgcgcaccaggaagttctttctggcc
ctcctgataaccagcatcatcatggctgtcctgcagggcatcattaacatcgtctacatc
gtcggagtgaaccccatggcccagagctcatccagtatgatgtacaatccgatgctcatg
atgtgtcagaacctctaccagaccagctactcacagatgggaggagtgggaggcttcccc
atgtacaaccagtacctctaccattactgctttgtggacccacaggagggagttgccatg
gtgtgtggattcctggttgtaatcgctctgggtgttgcagctttctttgcacacagaact
agagggaagatctggcgctatgggaaaccaaacatctactgggaggagcctctggtcgga
gggaaggcctcagagggcagagatgtagaggaatgggtgaacaatgtggaggaaagccgc
agtgttcaggacgcccctaccctgctggtgtcggagaaggggggcgggctgctcaacgcc
tcggccaacagcgtcatctcctaccccccggccaaggtggacagcagctcctataacgga
gacacctttgacaacaacgagtactcagagagaaccaccagccggccatcggaggtcttc
tcccatggcggagggaccagctccagcccttcagaggagacaggcgggggacgcaagccc
tccgccaacaggggcaagagacgcagacgtaacccggagctggacgagtctcagtatgag
acggagtacaccactggaggagagacaggcaatgaactcgacacagaagagtgggagagc
atgtatccggagataacctctgatgctcagcgtcacgattataagagagagtttgatgcc
gacctgaaggaatacaagcgtctgtgtgctgacatggacgacatcaacgatcagatgaac
aaactcagccggcagctggacacactggatgacacctctgccaaataccaggctgtagca
gaggaatataatcaactaaaggatctgaagcagacgtcagactaccagtctaagaagaga
gagtgtcgcaggctgagacacaaactgttccacatcaaacgcatggtgaaggagtacgac
aggaaccactcgtga
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