Lates calcarifer (barramundi perch): 108897975
Help
Entry
108897975 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: rho guanine nucleotide exchange factor 10
KO
K16727
Rho guanine nucleotide exchange factor 10
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108897975
03036 Chromosome and associated proteins [BR:
lcf03036
]
108897975
Membrane trafficking [BR:
lcf04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
108897975
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
108897975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_2
PH_19
RhoGEF
Motif
Other DBs
NCBI-GeneID:
108897975
NCBI-ProteinID:
XP_018553311
LinkDB
All DBs
Position
LG19:8761333..8811882
Genome browser
AA seq
1440 aa
AA seq
DB search
MDVEDFPPPPPEMLADSVPFADEDEGEAFDFDDSGDDIPEADRPPPAPPAPPAPSSEDQS
QDNLVASHPEDPSAPSLTPDTAPSSADTTVATSRAFTADGATAEGEGTSAAEGTDDTETD
LPPPPPPLNYDAETDPARTGSEDQYPSTDDPHPLQAVPRTSSQGKVNPYSVIDITPLQLQ
QLEQQHGPSSSAPSPMEPKEREEEVQEIHTSPAGITSGYSVPVPCGYATPSGVPLITPTY
TTPVIIRHLSVDEDVTVVGAGNTSVDSVFSEEYPPITEEDALAKWASDPANTAWMENPDE
VIYDDVPRENSDSNTDPDEMIYDDVELGEEGGCNSSLDNGWSSSEFESYDEASDGEGRPE
NGLPHAFMRGKPPQRKTHLSQDLTRLKEHYEKKMKDLMANTVGTVELQQLKQKHEQKMQK
LVKAAKEGTKDGLEKTKAAVKKGRSFIKTKSFCHERKSACFEDESELFIEVDCFNVEPVL
CSAPEGLSQQQLVRRCILGSILESEKNYLDALKRILEQYEKPLSQIEPRLLSDRKLKMAF
YRVREILQCHFLFQIALASRVAEWDSLEMIGDVFVASFSKSMVLDAYSEYVNNFSNAMAV
VRKTCASKPGFLEFLKHRQETSSDRMTLYGLMMKPIQRFPQFILLLQDMLKNTPVGHADR
LPLQMALTELETLAEKLNEKKREADQRCEIRHIAKAMNERYLNKLLSNGSRYLIRSDDMV
ETVYNERGEIIKTKERRLFLLNDVLMCATPNIRCQDGSGSGSGNAPLDQKFLLKWSVPLS
FVEVLEFGSSEDMADNSRYPAPHSGEKVVINAKPSKLYMGPGQLYQDLQNLIHDLSLVNQ
ISSMISSLKGNYQNVNPTVAQDWVSGLQRLILKKEEEIRAADRCRIQLQLPGKQDKSGKP
TFFSAVFNTLSPAIKQSWISNLQMAKLALEEDNLQGWFFAEDDGNQIKKQKHPLLLRQMP
VVMSKLQEFKVECAVHNPEPHINPESTADTPVVGHGCVWVASCTNQMGQIAIVAMQNSSP
KVTECFNVESRILCMAYVPAEQPQENGEKVPENNHVPPAKTSDTPSVCLGMEEGSIIVYK
SSQRSKKVRLQHFFTPDKSTVTSLVYKKHCLYAGLVSGSVAIYSRSQDGLWNCDKPTLLK
LGVLPVKAMLAVEEHLWASSGGQVFIISTHTHSVERQLEAHQEEGMVVSHMVVAGVGIWI
AFSSGSTLRLFHTETLEHLQDINIATPVHNILPGNQRVSVSSLLVCHGLLLVGTNLGVTV
ALSVPRLQGIPKVTGRGMVSLHAHNGPVRFLTVAAAVCNRPSGLPPSSTLPTSAQPTETE
EPENTQPPSDSALTPRGVWLGEAGCTTMALQDSVSSSSCGSLAPSQGSLEHGPEDGALYD
MLHDPAHHLRGRRSSKVDVSSLLVVSGGSGHRRVNKKTKQSRHEDTTSTIMIWQIPLLNM
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atggatgtggaagactttcctcccccaccccctgaaatgttggcagacagcgtccctttc
gctgatgaagacgagggagaagccttcgacttcgacgacagcggcgatgacatccctgag
gccgatcgcccaccccctgcacctccagctcctccagcccccagcagtgaggatcagagc
caggacaacctggtggccagtcaccctgaggacccctcagcaccctctctcacacctgac
acagctccatcatcagcagacacaacagttgccactagcagagccttcacagcagatgga
gcaacggcagaaggagaggggacatctgctgctgaggggactgatgacacagagacagat
ttacctccacctccaccccctcttaattatgatgcagagacagatcccgcaagaacaggc
agtgaagaccagtatccatccactgatgaccctcaccctctgcaggctgtccccaggacc
tcctcccagggcaaagtcaacccctactctgtgattgacatcactcctctccagctgcag
cagcttgagcagcaacatggcccctcctcttccgctccctcaccaatggagcccaaggaa
cgagaggaagaggtccaagaaatccacaccagccccgctggcatcacttcaggatactca
gtcccagtgccctgtggctatgcaaccccctctggcgtaccactcatcacaccaacttat
accacgcctgttattattcgacacctctccgtggatgaggatgtcactgtggttggggct
ggcaatacatctgttgacagtgttttcagtgaagagtatccacctattacagaagaggat
gctttggctaaatgggcatcagatcctgccaacactgcatggatggaaaatccagatgag
gtgatttatgatgatgtgcccagagagaactctgactccaacacagatccagatgagatg
atctatgatgacgtggagcttggcgaggagggtggctgcaacagctcccttgacaacgga
tggagctctagcgagtttgaaagctatgacgaggccagtgatggggaaggtcgccctgag
aacggcctgccccacgccttcatgagagggaagccgcctcagaggaagacccatctctct
caagatctgactcgcttgaaagaacactatgagaaaaagatgaaagatctaatggcaaat
acagtgggaacggtagagctgcagcagctaaaacagaaacacgagcagaagatgcaaaag
ctggtgaaggcagctaaggaaggaaccaaagatgggcttgagaaaacgaaagctgcagtg
aaaaagggacgctctttcatcaaaaccaagtcattctgtcatgagaggaagtcagcctgt
tttgaagatgagtctgaactcttcattgaggtggactgttttaatgttgagccagtgctg
tgttcagcaccagagggtctttcacagcaacagctggtgagaagatgtatattgggatct
attttggagagtgagaagaactatcttgatgcattgaagaggatactagagcaatatgag
aaacccctgtcccagattgagccaaggttgctgagcgacaggaaactgaagatggctttc
tatcgtgtgcgtgagattctgcagtgccacttcctgttccagattgccctggcgagccgc
gtggctgagtgggacagcctggagatgattggggatgtttttgtggcatcgttctcaaag
tctatggtgctggacgcctacagtgagtatgtgaacaacttcagcaatgcgatggcagtg
gtaaggaagacatgcgcatccaaacctggcttcctagagttcctcaagcatcgtcaggag
accagcagtgacagaatgactttgtatggcctgatgatgaaacctattcagaggttccca
cagttcattctgctccttcaggacatgttgaagaacacacctgtgggtcatgcagaccgt
ctgccccttcagatggccctgaccgaactggagacactggcagagaagcttaatgaaaag
aagagggaagctgaccagcgctgcgagatccgtcacattgcaaaggccatgaacgaacgt
tacctcaacaagcttctgagcaacggcagccgttacctgattcgctcagacgacatggta
gagacggtctacaacgagcgtggtgaaatcatcaaaaccaaggagcggcgtctcttcctg
ctcaatgatgtgctcatgtgtgccacacccaatatccgatgtcaggatggcagtgggagt
ggcagtggaaatgctccccttgaccagaagttccttctgaagtggagtgtgcctctgagc
ttcgtggaggtgctcgagtttggctccagtgaggacatggccgataacagccgttaccca
gcaccccactccggagagaaggtggtcatcaacgctaagccaagcaagctgtacatgggc
ccgggtcagttgtaccaagatctgcagaacctaattcatgatctcagcctggtcaaccag
atctccagcatgatcagcagcctcaaaggaaactaccagaatgtcaaccccacagtggcc
caggactgggtatcaggtcttcagaggctgattctgaagaaagaggaggagatcagggca
gctgaccggtgtaggatccaactccagctgcctggcaaacaagacaagtccggtaaaccc
actttcttcagtgcagtgttcaatactctcagcccagccatcaaacagtcatggatcagt
aacttgcagatggctaaactggctctagaggaggacaacctgcagggctggttctttgca
gaggatgatgggaatcagatcaaaaagcagaaacaccctctcttgcttcgacaaatgcct
gtggtcatgtcaaaattacaagagttcaaggtggagtgtgctgttcataacccagagccc
cacattaacccagagagcacagcagacactcctgtcgtgggccatggatgtgtctgggtt
gcaagttgtactaaccagatgggccagatagccattgtggccatgcagaactccagccct
aaggtgactgagtgtttcaatgtggagtcacgtatcctctgcatggcctacgtcccagct
gagcaaccccaagaaaatggcgagaaggtccctgaaaacaaccatgtgcccccagcaaag
accagtgatacccccagtgtctgtctgggcatggaggagggcagcattattgtgtataag
agcagccagcggtctaagaaagtacgtctgcagcatttcttcacaccagacaagtccact
gtcaccagcctggtctataagaaacactgtctgtatgccggcctggtcagcggctccgtg
gctatctactccagatcacaagatggtttgtggaactgcgacaagcccacgttgctgaag
ctgggagtcctcccagtcaaggccatgctggctgtggaggagcacctctgggcttcatcg
ggtggacaggtcttcatcatcagcacccacacacattctgtggagaggcagctggaagcc
catcaggaagagggcatggttgtgtcccacatggtggtggccggggtgggcatctggatc
gccttcagctctggttccacacttcgccttttccacacagagaccctggagcacctgcag
gacattaacattgctacccctgtccacaatatactgcctgggaaccagagagtatcagtg
agcagtcttctggtctgtcatggtctgcttctggtagggaccaacctgggggtgactgtc
gctctctctgtgcccagactgcaggggatccccaaggtcacaggtcggggcatggtgtcc
ttacacgctcacaatggaccagtcaggttcctcaccgtggctgctgcagtgtgcaaccgg
ccctctggcctgccaccttcctccacccttcccacctcagctcagccgacggagacggaa
gaaccggagaacacacagccgccctcagattcggccctgactccccggggcgtgtggctg
ggggaggcgggttgcaccaccatggctctccaagactccgtgtcctcctcatcctgcggc
tccctcgccccatctcagggctccctggagcacgggcctgaggacggggccctttacgac
atgctccacgacccggcccaccacctgaggggccggcgctccagcaaggtggacgtcagc
tctctgctggtggtgtccggaggttcgggccaccgcagggtgaacaaaaagaccaaacag
tctcgccacgaggacaccacctccactatcatgatctggcagattcccttactcaacatg
tga
DBGET
integrated database retrieval system
