Lates calcarifer (barramundi perch): 108898121
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Entry
108898121 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: hairy/enhancer-of-split related with YRPW motif protein 1
KO
K09091
hairy and enhancer of split related with YRPW motif
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
108898121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108898121
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Hairy, Hairy/E(SPL)
108898121
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Motif
Pfam:
HLH
Hairy_orange
dCache_2
Motif
Other DBs
NCBI-GeneID:
108898121
NCBI-ProteinID:
XP_018553510
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Position
LG3:complement(11801584..11804589)
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AA seq
339 aa
AA seq
DB search
MKRNHDFSSSDSELDETIEVEKESTDENGNMSSPLGSMSPTTSTQVQARKRRRGIIEKRR
RDRINNSLSELRRLVPSAYEKQGSAKLEKAEILQMTVDHLKMLHAAGGKGYFDAHALAMD
YRGLGFRECLAETARYLSIIEGLDNTDPLRIRLVSHLNNYASQREAHSGLSHLAWGSAFG
SPSAHLAHHPLLLQHQQGAPLAPLPRSTTSSPQTPLSSTSASSTSSSSSSSSSSSSGAGE
AHIPGRRSSSSSTTTTPHSDQGPIRVPPTTAAPTTVLHPPLVPSSASKLSPPLLSSLSAF
PFPFSAFPIISPTTAISPPAPTSSVGKPYRPWGMEIGAF
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaaatcacgattttagctcctcggacagcgagctggatgagactattgaagtg
gagaaggagagcacagatgagaatgggaatatgagctctcctctgggctccatgtctccc
actacatccactcaggtgcaggcgaggaaaaggcgtcgaggaataattgagaaacggcgc
cgtgacaggatcaacaacagcctcagcgagctccgcaggctggtccccagcgcctatgag
aaacagggctcagccaaactggagaaggcagagattttgcagatgactgttgaccatctg
aagatgcttcatgcagctggaggcaaaggttactttgacgcccatgccctggcgatggac
taccgtggtttgggtttcagggagtgcctggctgagacggcccgctacctgagtataatc
gaaggcttggacaacacagaccccctgaggatccgcctggtctcccacctcaacaactac
gccagtcagagagaggctcactctggcctgagtcacctggcgtggggctctgcgtttggg
tccccttcagcccacctcgcccaccaccccctcctcctccagcaccagcagggggcacct
ctggcgcctttaccccgcagcaccaccagcagcccgcagacccctctgtcatccacgtct
gcctcgtccacctcctcctcctcctcttcgtcatcctcgtcctcgtcgggggccggggag
gctcacatcccaggcagacgcagcagcagcagcagcaccaccaccacccctcactcggat
cagggcccgatccgagtcccaccgacgaccgctgctcccaccaccgtcctgcaccctcct
ttggtcccctcatcggcatccaagctctcccctcctctcctctcctccctctcagcgttc
cccttccccttcagcgccttccccatcatctcccccaccactgccatcagccccccagcc
ccaacatccagtgtggggaaaccctatagaccctggggtatggagataggagctttctga
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