Lates calcarifer (barramundi perch): 108898577
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Entry
108898577 CDS
T04895
Name
(RefSeq) thyroid hormone receptor alpha isoform X1
KO
K05547
thyroid hormone receptor alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108898577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108898577
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
lcf03310
]
108898577
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
108898577
Nuclear receptors [BR:
lcf03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
108898577
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
108898577
NCBI-ProteinID:
XP_018554020
UniProt:
A0A4W6ELI0
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Position
LG11:complement(19591691..19684864)
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AA seq
416 aa
AA seq
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MEPMSNKQDSNSSEGDEKGWPDVPKRKRKNSQCSVKSMSALSVSVPGYIPSYLEKDEPCV
VCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGCCIIDKITRNQCQLCRFKK
CISVGMAMDLVLDESKRVAKRRLIEENRERRKREEMVRTLQIRPEPNTAEWELIRMATEA
HRHTNAQGSSWKQKRKFLPDDIGQGPLVPTSDGDKVDLEAFSEFTKIMTPAITRVVDFAK
KLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVKREQLKNGGLGV
VSDAIFDLGKSLAQFNLDDSEVALMQAVLLMSSDRSGLTSVEKIEQCQEAYLLAFEHYIN
YRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPNELFPPLFLEVFEDQEV
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggagccaatgtccaacaagcaggatagcaactcatctgagggggatgagaaagggtgg
ccagatgtgccaaagagaaagaggaagaacagccagtgttcggtgaagagtatgtctgct
cttagcgtctctgttccagggtacatccccagctacctggagaaggatgagccttgtgtg
gtgtgtggggacaaagcgaccggctaccactaccgctgcatcacctgcgagggctgcaag
ggtttcttccgcaggaccatccagaaaaatctccatccatcttactcctgtaaatatgaa
ggatgctgcatcattgacaagatcacccgcaaccagtgccagctgtgccgctttaagaag
tgcatctctgtgggcatggccatggacttggtgttagatgagtcgaagcgtgtggccaaa
cggcgtctgatcgaggagaatcgagagagaaggaagagggaggagatggtgcggacactg
cagataaggccagagccgaacaccgcagagtgggagctgatcaggatggcaacagaagct
catcggcacaccaatgcccagggctccagctggaaacagaagcgcaagttcctgccggat
gatatcggccagggtcctttggtccccacgtccgatggcgacaaagtggacctggaagcc
ttcagtgagttcaccaagatcatgacccccgccataacgcgtgttgtcgactttgccaag
aaattgcccatgttctcagagctgccttgtgaagaccagatcatcttgctgaagggctgc
tgcatggagatcatgtcgctgcgcgctgctgttcgttacgatccagacagcgagactctg
acactaaacggcgagatggcggtgaaacgtgagcagctgaagaacggcgggttgggcgtg
gtgtcggacgccatctttgatttgggcaagagcctggctcagtttaacctggatgactca
gaggtggcgctgatgcaggccgtgctgctcatgagctcagaccgttcaggactgaccagt
gtggagaagatcgagcagtgtcaggaggcctacttgctggcgttcgagcactacatcaac
taccgcaagcacaacattccccacttctggcccaagttgctgatgaaggtgacggaccta
cgcatgataggggcttgccatgccagccgcttcctccacatgaaggtggagtgtcccaat
gaactctttcccccactcttcctggaggtctttgaggaccaggaagtgtga
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