Lates calcarifer (barramundi perch): 108900168
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Entry
108900168 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: peregrin
KO
K11348
bromodomain and PHD finger-containing protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108900168
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
MOZ/MORF complex
108900168
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H_2
EPL1
zf-HC5HC2H
Bromodomain
PWWP
PHD_2
PHD
DUF3915
Motif
Other DBs
NCBI-GeneID:
108900168
NCBI-ProteinID:
XP_018556580
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Position
LG6:complement(18190520..18203044)
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AA seq
1296 aa
AA seq
DB search
MGLDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDNPTPAQTVPQKK
RKGRPPRASLAGSGDTDDGGGNGGGGPGHGGNTPGSPNRSERSHSPGRETMTYAQAQRMV
ELEIQGRIHRISIFENIDVVSEEDSDAEDAPPSGTGGSGGGVCNGSDGGPGGNEVGGSGK
DRPDIPSSNGGKATPKSGKHKSKEKKKDGSSHHHSAQSGPAVKLPEAVFRELDQERPDAP
PRPSSYYRYIDKSVEELDEEVEYDIDEEDYIWLDIMNDKRRRDGVTPIPQEVFEYLMDRL
EKESYFESHNKADPSTLIDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPE
GQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDARWAHVVCALWIPEVCFANTVFLEPID
SIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGAN
GTSFSVRKTAYCDIHTPPGSARPLGGVGGASMGSSHSEGELEEDDEPSIGHDDDSKGWSS
ERAKRAKAKSRLKMKRARKILAERRAAAPVVSVPCIPPHRLSKITSNLTVPRKSQFMQRL
HSYWTLKRQSRNGVPLLRRLQTHLQSQRHIDPLPPQPSSQLPSRDSEEKQTALKEQLKAW
QRLRHDLERARLLVELIRKREKLKRETIKVQQMALEMQLTPFLVLLRSTLEQLQERDTNN
FFTEPVPLAEVPDYLDHIDTPMDFQTMWNLLESHRYLTFEAFEADFGLIVNNCLKYNAKD
TVFYRAALRLREMGGAVIRTARRQAERIGFDYETGMHLHREPSPDSQREIERDRERERER
DRDRERDRPLSSNEDDLLLPENRRRLPLEEQLHYLQVRLDEVSSGKHSIGQSRRAKALRK
EISVIKRKLAHQREGGSGMGGRESVGGGDRGSSLPHHPSSSGHHDEGGESSSQEIGGKDL
SVSSSALAPEVGRRTSVLFSKKNQKMTGPPKRPGRPPKNRDAAYGGAGVSQSPIGPPQLP
LLSPARQRKRPRSPRSSSSSDSDSDNDDLLPGLPSNGFDGGNQPVTESFRVYRNEPRLPR
SSSDSESTTSSSSSAASDRTSTTPSKQGRGKASFSRSAFQEDSSEETSGTENDSYSVGGS
RGVSHLVRGRARSGCWMTSDDYSSLEALDLVWAKCRGYPSYPALIIDPKMPREGVFHRGV
PIPVPPLDVLKLGEQMTQEAREHLFLVLFFDNKRTWQWLPRSKLVPLGVDQELDKEKMLE
GRKSNIRKSVQVAYHRAMQHRSKVQGDPSSETSDSD
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atggggctggactttgacgtgaagacgttctgtcacaatctgcgggccaccaagccccct
tacgagtgcccagtggagacttgccgcaaggtttacaagagctacagtggcatcgagtat
catctttaccactatgaccatgacaacccaactcctgcacagactgtaccccagaagaag
aggaagggacgccctcctcgtgcgtcactggcagggtcgggagatacggatgatggtggt
ggcaacggaggcggaggaccggggcacggggggaacacccctggcagccccaacaggtca
gagcgctctcactccccaggcagagagacgatgacctatgcccaggcgcagcgcatggtg
gaactggagattcagggacgcattcaccgcattagcatctttgagaacattgatgtggtg
tctgaggaagacagcgatgcagaggatgcgccaccatctggtactggaggcagcggtgga
ggcgtgtgcaatggcagcgacggtggacccgggggcaacgaggtaggagggagtggcaag
gaccggccagatatcccttcttctaatgggggcaaagccaccccaaagtctgggaagcat
aagagtaaagaaaagaagaaggacggctcatctcatcatcacagcgctcagtctgggcct
gctgtcaagcttcccgaggcggttttcagagagctggaccaagagagacctgatgcccct
cctcggccgtcatcttactacaggtacattgataagtctgtggaggagctggatgaggag
gtggagtatgacatcgatgaggaggactacatctggctcgacatcatgaacgacaagcgg
cggcgtgacggcgtgacacccatcccacaggaggtctttgagtaccttatggaccgctta
gagaaggagtcctactttgagagccacaacaaggcggaccccagcaccctaattgatgaa
gatgctgtctgctgcatctgtaacgatggagagtgtcagaacagcaatgtgatcctgttc
tgcgacatgtgtaacctggcagtgcaccaggagtgctacggcgtgccctacatcccggag
ggccagtggctgtgtcgccgctgcctgcagtctccgagtcgagctgtggactgtgcgctc
tgtcccaacaagggaggagctttcaaacagacagacgatgcacgctgggctcacgtagtg
tgtgccctctggatcccagaggtctgctttgccaacacagtctttctggagccgattgat
agtattgagcacatccctcctgcacgctggaaactcacctgctacatctgcaagcagcga
ggctcaggcgcctgcatccagtgtcacaaagccaactgttacacagccttccacgtcacc
tgcgcccagcaggcgggcctctacatgaaaatggagcccgtcagagagactggagccaat
ggcacctctttcagtgtccgcaagacagcttactgcgacattcacacgccgccgggatct
gcgcgacctttggggggagttggcggggccagcatgggttcatctcacagcgagggggag
ctcgaggaggacgacgagcccagcatcggccatgatgacgactccaagggctggagctct
gagcgggccaagagggcaaaggcgaaatccaggctgaagatgaagagagcgaggaagatc
ttagcagagaggagagctgctgcgccagtggtttctgtgccctgtatacctccccacagg
ctcagcaaaatcaccagtaatttgacggtacccaggaagagccagttcatgcagcgactt
cacagctactggaccctgaagaggcaaagtcgcaatggtgtgcctctgctgcgccggctc
caaacccacctgcagtcacaacgacacattgacccgctcccaccacaaccttcatcgcag
cttccttcaagggacagcgaggagaaacagacggctttaaaggagcagctgaaggcatgg
cagagactgagacatgacctggagagagccaggctgctggtggagctcatccgcaagagg
gaaaaactcaagagggagacgattaaagtgcagcagatggcgctggagatgcagctcact
cctttcctggtgctgttgaggagcacattggaacagttacaggaaagagacactaacaac
tttttcactgagcctgtaccgctagcagaggtaccagactacctggaccatattgacact
ccaatggacttccagactatgtggaacctgctcgagtcccatcgctacctcacttttgag
gcctttgaggcagactttggcctcattgtcaacaactgcctcaagtacaatgccaaggac
acggtcttctatcgtgctgcgctgcggcttagagagatgggcggggccgtcataagaacg
gctcggcgccaagccgaacggatcggcttcgactacgagactggcatgcacctccaccga
gagccaagtccagacagtcagcgcgaaatagagagagacagagagagggagcgggagcga
gacagggacagagaaagagaccggccattgtcttctaatgaagatgacctgctcctgcca
gagaacaggcgacggttaccgctggaagagcagctgcattatctgcaggtgcgtcttgat
gaggtcagctcggggaagcacagcatcggccagtctcgtagagccaaagctctgaggaaa
gagatcagtgttatcaagaggaagctggcacaccagcgggagggaggctctggcatgggt
ggcagggagtccgtgggaggaggagaccggggttcctctctcccccatcacccatcctcc
tcaggacaccatgacgaggggggagaaagcagcagccaggagataggtggaaaagatctg
agtgtttcctcgtctgccctcgctccagaggtgggccgtcggacatctgtcctcttctcc
aagaagaaccaaaaaatgactggaccccccaaaaggccaggacgccctcccaagaaccgg
gatgctgcctacggtggggcaggggtgagccaaagccctattggtcccccacagctaccc
ctgttgtcaccagccaggcagaggaagaggccccgcagcccccgcagcagctccagctct
gacagcgacagcgacaatgacgacctgctgccaggtttgccaagtaatggctttgatgga
ggaaaccagccagtaacagagagcttccgtgtttacagaaatgaacctcgtctccctcgt
tccagctcagattctgagtccacaaccagcagcagcagcagtgcagcttctgacaggacc
agcacgaccccgtctaaacagggccgaggaaaggcatcgttctctcgctcggccttccag
gaagacagcagcgaggaaacgtcaggcaccgaaaatgattcctactcggttggaggatca
cggggtgtatcacacttggtgcgtggccgggccaggtcaggatgctggatgacctctgat
gactactcctctctggaagctctggacctggtgtgggccaagtgcagaggctatccttca
tatcctgctctgataattgacccgaagatgcccagggagggggtcttccaccggggtgtc
ccaatcccagtcccacctttggatgtgctgaaacttggggagcaaatgacccaggaagcc
agggaacacctcttcctggttctcttctttgacaacaagagaacctggcagtggctgcct
cgctctaagctggttccgctcggagtggaccaggagctggacaaggagaagatgctggag
ggcaggaaatccaacatccgcaagtcggttcaggtggcctaccaccgcgccatgcaacac
cgcagcaaggtgcagggagaccccagcagcgaaaccagcgacagcgactga
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