Lates calcarifer (barramundi perch): 108900205
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Entry
108900205 CDS
T04895
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108900205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108900205
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108900205
Spliceosome [BR:
lcf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108900205
Complex C
U5 SnRNP specific factors
108900205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-GeneID:
108900205
NCBI-ProteinID:
XP_018556655
UniProt:
A0A4W6EVG6
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Position
LG6:19573689..19580002
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AA seq
806 aa
AA seq
DB search
MAADSTDKKDAESSGTKDRERRRSRSRDRDRKVSPSRKRHRSRERNRSKSAERDRRMKDK
DRDKDRDRDKDRERSRKDRDGHRRDKDRSKRSRSLSPKSKDAKLKREKDIKTEEEEDEKK
KKEKVQPLSLEELLAKKKAEEEAEAKPKFLSKEEREAEALKRRAQQTEERRRLLEDERKK
RRMFQDIGRKMLEDPQERERRERRERMERENNGNEEDDGRQKLREEKDKSKELQAIKERY
LGGLKKRRRTRHLNDRKFVFEWDASEDTSVDYNPIYKEKHQVQLYGRGFIAGIDLKQQKR
EQSRFYGDLMEKRRTLEEKEQEETRLKKMRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFR
EDYSITTKGGKIPNPIRNWKEYPLPAHILEVIDKCGYKDPTPIQRQAIPIGLQNRDIIGV
AETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAVILAPTRELAQQIEEETIKFGKP
LGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLGRCTYVVLDEADRM
IDMGFEPDVQKILEYIPVTNQKPDTDEAEDPEKMMMNFESGKHKYRQTVMFTATMPPAVE
RLARSYLRRPAVVYIGSAGKPHERVEQKVLLMSEGEKRKKLLEVLAHGFEPPIIIFVNQK
KGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVS
MVINYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSAVFYDLKQAILESPVSTCPPE
LANHPDAQHKPGTILTKKRREETIFA
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgactccacagacaaaaaggatgcagaatcctcagggaccaaagacagagag
aggagacgcagccgttcacgagacagggatcgcaaagtttcaccttcacgcaaacgtcat
cggtctcgtgagagaaatcgctccaaatctgcagaaagagaccgtcgcatgaaagacaag
gacagagacaaggaccgtgacagagataaggacagagagagaagccgcaaggacagagat
ggccatcgacgtgataaagatcgcagcaagaggtccaggagtctgtcaccgaagtcgaag
gatgccaaattaaagagagagaaggatataaaaacagaagaggaggaagatgagaaaaag
aagaaagagaaggtccagcccctatctttagaagagcttcttgccaaaaaaaaggcagaa
gaggaggcagaggcaaagcccaagttcttgtccaaagaagagcgagaagctgaggctctg
aaacggagggcgcagcagacagaggagaggaggcggttgttggaagatgagaggaagaag
agaaggatgttccaggacatagggagaaaaatgctggaggatcctcaggaaagggagcga
cgagagcgcagagaacgaatggagcgagagaacaatgggaatgaagaagatgatggacga
caaaagctcagggaggagaaagataaaagcaaagagctccaggctatcaaggagcgttac
ctgggtgggctcaagaaacgtcggagaactcgtcacttgaatgacaggaagtttgtgttt
gaatgggatgcttctgaagacacatcagtcgactacaacccaatttacaaagaaaagcat
caggtgcagctgtatggacgaggcttcatcgcaggcatcgacttgaagcagcagaaaaga
gagcaatcacgtttctatggtgacctgatggagaaacggcgtacgctggaagagaaggag
caggaagagacgagactgaagaagatgcggaaaaaggaggccaagcagcgctgggatgat
agacactggtcccagaagaaactggacgagatgactgacagagactggcgaatcttcaga
gaggactacagcatcaccaccaagggaggaaagatcccgaaccccatcaggaactggaag
gagtacccactgcccgcacacatcctggaagtcattgacaaatgtggctacaaggatcca
acaccaattcagaggcaggccattcctattggcttacagaaccgtgacatcattggtgtg
gccgagacaggtagcggtaaaacggctgctttcctgattccactgcttgtctggattacc
accctgccaaaaattgataggattgaggactcagaccagggtccttatgctgtcatcctg
gctccaactcgtgagttggcgcagcagattgaagaggagaccataaagttcggtaaaccg
cttggaatccgtacagtggctgtgattggaggaatctccagagaggaccagggcttccgc
ctcaggatgggctgtgagattgtgatcgccacccctggtcgtctgattgatgtgctggag
aaccgctacctggtcctgggccgctgtacctatgtggtacttgacgaggccgatcgtatg
attgacatgggtttcgagcctgacgtccagaaaattctggagtacatcccagtgaccaat
cagaaaccagacacagatgaagccgaggaccctgagaaaatgatgatgaactttgaatca
ggaaaacataaatacagacaaacggtcatgttcacagctactatgcctccagctgtggag
cgactggccaggagctacttgagacgtcctgctgtggtgtacattgggtctgctggcaaa
cctcacgagagagtcgaacagaaggtcctgctcatgtcagagggagagaagaggaagaag
ctgctggaggtgttggcgcatggcttcgagcctcctatcatcatctttgtcaaccagaag
aagggttgcgacgtgctggccaagtctctggagaagatggggtacaatgcctgcacgctg
cacggtggcaaaggccaggagcagagagagtttgccctctccaatctcaaagcaggagcc
aaagatatcctggtggccacagacgttgctggtcgaggtattgatatccaggacgtgtcg
atggtcattaactacgacatggctaagaacattgaagactatatccatcgtattggtcgt
acgggtcgtgccggtaagagtggtgttgccatgactttcctcaccaaagaggactcagcg
gtgttctacgacctgaagcaggccatcctcgagagccctgtctccacctgccctccagag
ctggccaaccacccagacgctcagcacaaacctggaaccatcctgaccaagaagagacgc
gaggagaccatctttgcctga
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