Leptothrix cholodnii: Lcho_1372
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Entry
Lcho_1372 CDS
T00681
Name
(GenBank) transcriptional regulator, NifA, Fis Family
KO
K02584
Nif-specific regulatory protein
Organism
lch
Leptothrix cholodnii
Pathway
lch02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Lcho_1372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lch03000
]
Lcho_1372
Transcription factors [BR:
lch03000
]
Prokaryotic type
Helix-turn-helix
Other families
Lcho_1372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
GAF_2
HTH_8
AAA_5
AAA_2
Mg_chelatase
AAA
GAF_3
AAA_16
bpMoxR
DUF815
nSTAND3
AAA_22
AAA_7
TIP49
Parvo_NS1
Motif
Other DBs
NCBI-ProteinID:
ACB33640
UniProt:
B1Y713
LinkDB
All DBs
Position
1454682..1456463
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AA seq
593 aa
AA seq
DB search
MLNRTVMNERSHVELITIYEICRILGASLDIGRTFRASLNVLAAHLGLSRVMIVMAPDDR
DGEARLRVHSSVGLDQEQERRGQWHYGEGVIGHVYASGMPVVVPDVAQAAEFIDRTGAFG
AQADRMMAFVVVPLKTDRAVVGVLAAQREVSGGVRLSDDQRILTMAATLMAQAASLHGAV
TEEHKRLQLETTRLQKALAPEPRGRYTLDNVVGVSRGMQQVFSEVHQAAPARATVLLRGE
SGTGKEAIARALHYLSPRKDAPFIKVNCAALTESLLESELFGHERGAFTGAAGDRKGRFE
QAHTGTLFLDEVGDISASFQAKLLRVLQEREFERVGGNRAIKVDVRLICATNRDLEKMVK
RGEYRADLYYRINVVSIFLPPLRERRDDIPALVSHFVDRFNKENRRKLRIAGDAMEVLSH
CYWPGNVRELENCIERTATMANGDLIRGVSFPCRHNRCLTQTLHHLEKDDAVAPISMPTS
LHIPARLPIRESPRPVPGSIPASAAAASADPDDDWLDDEADGGDDVLRIGPTEHLTGTPR
QFGNEPPDGERERLIWAMEQCAWVQAKAARLLHVTPRQLGYALRKYNIEVHKF
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaccggacggtgatgaatgaacggtctcacgtcgagctgatcacgatctacgag
atctgccgcatcctcggtgcctcgctcgacatcgggcgcacgtttcgcgcctcgttgaac
gtgctggctgcgcacctcggcctgtcgcgcgtgatgatcgtgatggcgcccgatgaccgg
gatggcgaggcacggctgcgtgtgcacagctccgtcgggctggatcaggagcaggagcgc
cgcggccagtggcattacggcgaaggcgtgatcggccacgtctatgccagcggcatgccg
gtggtggtgcccgacgtggcgcaggccgcggagttcatcgatcgcaccggggctttcggc
gcacaggccgatcgcatgatggcgttcgtggtggtgccgctcaagaccgaccgggccgtg
gtcggcgtgctggcggcccagcgcgaggtcagcggcggtgtgcgtctgtcggacgatcag
cgcatcctcacgatggccgccacgctgatggcgcaggccgcgtcgttgcacggcgcggtc
accgaggaacacaagcgcctgcagctcgagaccacccgcctgcagaaggcgctggcgccc
gagccgcgcgggcgctacacgctcgacaacgtggtcggcgtgtcgcgtggcatgcagcag
gtcttcagcgaggtgcaccaggccgcgcccgcgcgtgccaccgtgctgctgcgcggcgag
agcggcaccggcaaggaggcgatcgcgcgggcgctgcattacctgtcgccacgcaaggac
gcaccgttcatcaaggtcaattgcgcggcattgaccgaatcactgctcgagagcgaactg
ttcggccacgagcggggcgccttcaccggtgcggccggtgaccgcaagggccgcttcgag
caggcgcacaccggcacgctgttcctcgacgaagtgggcgacatctcggcatcgttccag
gccaagctgctgcgggtgctgcaggagcgcgagttcgagcgcgtgggcggcaaccgcgcg
atcaaggtcgacgtgcggctgatctgcgccaccaaccgcgacctcgagaagatggtcaag
cgtggcgagtaccgcgccgacctctattaccgcatcaacgtggtgtcgatcttcctgccg
ccgctgcgtgagcggcgcgacgacatcccggccctggtgtcgcacttcgtcgaccgcttc
aacaaggagaaccgccgcaagctcaggatcgccggtgacgcgatggaggtgctgtcgcac
tgctactggccgggcaatgtgcgcgaactcgagaactgcatcgagcgcaccgccaccatg
gccaatggcgacctgatccgcggcgtgtcgttcccgtgccgccacaaccgctgcctgacg
cagacgctgcatcacctcgagaaggacgacgcggtcgcgccgatcagcatgccgacgtcg
ctgcacatccccgcacggctgccgatccgggagtcgccgcggccggtgcccgggtcgatc
ccggcttcggcggctgccgcatcggcggaccccgatgacgactggctcgacgacgaggcc
gatggcggcgacgacgtgttgcgcatcggcccgaccgaacacctcaccggtacaccgcgc
cagttcggcaacgagccaccggatggcgagcgcgagcgcctgatctgggccatggagcaa
tgtgcctgggtgcaggccaaggcggcgcggctgctgcacgtgacgccgcgccagctcgga
tatgcgctgcgcaagtacaacatcgaggtgcacaaattctga
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