Latimeria chalumnae (coelacanth): 102351679
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Entry
102351679 CDS
T02913
Name
(RefSeq) collagen alpha-2(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm04510
Focal adhesion
lcm04512
ECM-receptor interaction
lcm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102351679
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102351679
09142 Cell motility
04820 Cytoskeleton in muscle cells
102351679
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcm04147
]
102351679
00536 Glycosaminoglycan binding proteins [BR:
lcm00536
]
102351679
Exosome [BR:
lcm04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102351679
Glycosaminoglycan binding proteins [BR:
lcm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102351679
Hyaluronan
Extracellular matrix or blood plasma proteins
102351679
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
iSTAND
Motif
Other DBs
NCBI-GeneID:
102351679
NCBI-ProteinID:
XP_006000057
LinkDB
All DBs
Position
Un
AA seq
874 aa
AA seq
DB search
MAHLFLKTIIIFSWILRSFSQFYTDDDALTSFPLQLPTLKHDFVRDGCPISVYFVVDTSE
SVALKEYPWGSLVDVLKLFLRTFVSKLQTVNLQASKVNLEIGGLHFSDRVEIFSQVTSNI
QDFLQRVKAINYIGRGTFIDCALRNMTEQMRLSSQGRPQLRFAVILTDGHITGNPCGGVQ
AAAEAARAAGIKIFVVATSLDTMESELKMIASSPVEVYRKDYIAYPNNYTNVTVNRIIDI
MAKEGDSMCDAPTCFTIEGNKGLKGTKGIKGSKGNIGPAGDLGLQGQRGDPGIEGPIGFP
GIKGALGSKGEKGDVGSTGLKGEPGTLGYNGIDGIKGKPGSIGAPGCKGDPGMQGEEGPP
GDFGVKGPAGDPGEKGYAGQPGRPGPRGLQGEEGEKGARGYIGNPGLPGQKGAKGQPGAP
GDTGDPGYRGDSGKVGSRGPPGNKGEKGELGPEGARGTPGQRGKKGGPGAPGFPGSRSSP
GENGATGPQGSPGEAGDIGPRGDVGSPGAKGDRGKNGYNYVGPRGVQGDRGDSGLPGPQG
ARGHYGEKGQQGIKGSRGEPGDPGPDGQPGERGSRGQPGPQGSTGVRGTSGMTDCEIMSY
VRETCGCCDCVKACPSINLVFVIDSSESVGKTNFSLAKNFVISIANRLGKMAKNITDLSE
PDHVCPDLKCAPALTIAPMINRPVDIVFFVDGSERSGKENFVKTLHFIHHLSQELTLAKK
DNDHKGARIAVLQYGGETQQDLLLDFSYSVNNFQSQITRAVYQESSSYLGSAIIYAVDNL
INNRAGNFQGVRQNAEISFVFMTDGVTNDKSIAEGIEAIRKNNIVPSAIAVGSDIDHGRL
HELVLKEHTSLFMIQQYADLLSTRFVRHMAYWLG
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atggctcaccttttcctgaagaccatcatcatcttttcatggattctgcgatccttttct
cagttttatactgatgacgatgcgcttacctccttccctctccaactaccaacactaaaa
catgattttgtgagagatgggtgccccattagtgtatattttgtggttgacacctctgaa
agtgtggcactgaaagagtacccctggggtagcctggtggatgttctcaaactcttcctc
agaacttttgtttcaaagctacaaacagtcaaccttcaagccagcaaggtaaatctggaa
attggaggccttcatttctcagatcgggtggaaattttcagccaggtaaccagcaacatc
caagattttcttcagagagtcaaggctatcaactatattggcagaggcactttcattgac
tgtgctttgaggaacatgacagaacagatgaggctgagctctcagggaaggcctcagcta
cggtttgctgtaatattaaccgatggccacatcacagggaatccttgtggtggagtacag
gcagcagctgaagccgccagagcagctgggattaagatcttcgtggtggctaccagcctt
gatactatggaaagtgagctgaagatgattgcaagttctcctgttgaagtctatcggaaa
gactatatagcttatcccaacaactacacaaatgttacagtcaacagaatcattgacata
atggcaaaagaaggagattccatgtgtgatgcaccaacatgttttacaatagaaggcaac
aaaggtctcaaaggaacaaaaggcataaaaggatcaaaaggcaacatcggtccagctggt
gatctaggactccaaggacaacggggtgaccccggtattgaaggcccaatcggattccca
ggcattaagggagctcttggtagcaaaggagaaaaaggagacgttggttcaactggacta
aagggggaacctggaacccttggttacaatgggatcgatggtattaagggaaagccaggc
agcattggggctcctgggtgcaaaggggaccctgggatgcagggagaggagggccctcct
ggtgactttggggttaaaggtcctgcaggagatccaggagaaaagggttatgctgggcag
cctggacgaccaggaccccgaggccttcaaggagaggaaggtgaaaagggagccagagga
tacataggaaatccaggtcttccaggacaaaaaggagcaaaggggcagccaggcgctcct
ggagatactggagatccaggctacagaggtgacagtggaaaagtaggatcacgggggcct
ccagggaacaaaggagaaaagggagaattaggacctgagggggcgagagggacacctgga
cagagaggaaaaaaaggtggtccaggtgcacctggctttcctggatccagatccagccca
ggagaaaacggtgctacagggcctcagggaagtcctggtgaagctggggatattggacca
agaggagatgtgggttccccaggagccaagggtgatagaggcaaaaatggatacaactat
gtagggcccaggggagtccagggagacagaggagattcaggcttaccaggtcctcaggga
gccagaggacattatggtgagaaaggtcaacagggtatcaagggtagtcgtggagagcca
ggtgaccctggaccagacggccaaccaggagaaagagggtcaagaggtcagcctggtcca
caaggttccacaggtgtgcgagggacttcaggaatgacagattgtgagataatgagttat
gtgagagaaacatgtggatgctgtgattgtgtcaaagcatgtccgtcaataaacctggtg
tttgttatcgacagctcggagagtgtcggcaagacaaactttagcctcgccaaaaacttt
gtcatcagcatagccaacagacttgggaaaatggcaaaaaacatcacagatttatcagaa
ccagatcatgtttgcccagacctgaaatgtgccccagcactaaccattgcgcctatgatc
aaccgccctgtggatattgtgttctttgtcgatggctctgaaagatctgggaaagagaac
tttgttaaaactcttcatttcattcaccatctatctcaggagcttaccctagccaagaag
gacaatgaccataagggggccaggattgcagtccttcagtatgggggagaaactcaacag
gacctgcttctggatttttcatacagtgtaaacaatttccaatctcagatcactcgggca
gtctaccaagagtcgtcctcctatttgggaagcgctatcatttatgctgtggataacctc
atcaacaatcgagctgggaactttcaaggtgtgcgacagaatgcggagatctcttttgtc
tttatgacagatggtgtgaccaatgacaagagtattgcagagggcatagaggccatcagg
aagaacaacatagtgccaagtgcaatcgctgttggttctgatatcgatcatggcagactc
catgagcttgtgttgaaggaacatacgtcactgtttatgattcagcagtacgctgacctg
ctttcaactagatttgttaggcacatggcctactggttagggtaa
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