Latimeria chalumnae (coelacanth): 102355071
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Entry
102355071 CDS
T02913
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
102355071 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcm03400
]
102355071 (LIG3)
Enzymes [BR:
lcm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102355071 (LIG3)
DNA repair and recombination proteins [BR:
lcm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
102355071 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
FAD_binding_1
DUF1128
mRNA_cap_enzyme
Synaptonemal_3
Motif
Other DBs
NCBI-GeneID:
102355071
NCBI-ProteinID:
XP_014351145
LinkDB
All DBs
Position
Un
AA seq
1042 aa
AA seq
DB search
MLGLWRLLFRYTAPSLSRKEAVKSKPTAKFSLSCWIIGSVARPFHCSGLLCQNPHRSRIC
FISLFGWSSGCSFLRPAICLVPSSVRAKTSDMAEQRYCVDYAKRGTAGCKKCKDKIAKGM
VRIAKVVPNPFTESGGDMKEWYHVKCMFEKLERARATTKKIEDLTELEGWQELQDAERDL
INQHITELANKTATTPKKKVTVQAKLSPAGQVISSSKLPTAGPSSAPRKFPGFTATKAES
TDDAPSTDGPSAQSCDLSHKDCSLREFRKLCANIADKPSYNVKTQIIQDFLYKGAGGDGF
HGDTYLTVKLLLPGVIKSVYNLNDKQIVKIFSKIFNCNLEEMVQDLEQGDVSETVRIFFE
ASCTFLAAAKSTLSIQEVDAFLQHLSKLTKEDDQQRLLQDMASRCTANDLKCIIRLIKHD
LKMNAGAKHVLDALDPNAYEAFKASRNLRNVVERVLKNQQDEEKMPGMKRSLSVKASLMT
PVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHKSGESFSYFSRSLKPVLPHKVA
HFKDFIPKAFPGGNSIILDSEVLLIDTNTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIY
FNGVSLMDRPLIERRKFLHDNMVEIPHRILFSEMKHVTKASDLADMITRVIREGLEGLVL
KDTKSLYEPGKRHWLKVKKDYLNEGAMADSADLMVLGAFYGQGSKGGMMSIFLMGCYDPS
CGKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKINKNYYPDFIARDPKKA
PIWEITGAEFSKAEAHTANGISIRFPRCTRIRDDKDWQTATNLQQLQELYRVSKETLDTN
LLTSLSKGTDDSSGGSNGDTEDSSKPSTPGISKPSSSRGSSKGSTAKSPGKEQKKPKSQQ
GTSSSAWKSPTEEGVDPTAGKGVKRKLITPEQNGKKMKLSGPVSSGEKTKSSSLSAQSIA
SSQHKTLLDIFTGVRLYLPPSVEDFSKLQRYFIAYDGDLVPEFDTSGATHTVSDLEGNSN
AKRVSPNWIWECVKKRRVVPPC
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgcttggtctgtggaggttgctgttccgatacactgctccaagcttgtccagaaaggag
gctgttaaaagcaaacctacggcaaaattctccttaagctgttggatcattggatctgtg
gcacggccctttcattgttcaggtttgctgtgtcagaatccacatcggagtagaatctgc
ttcatttctttgtttggctggagttctgggtgtagcttcctcagacctgccatctgcttg
gtgccaagcagtgtgcgtgcaaagactagtgacatggcggagcagcgatactgtgtggac
tatgccaaacggggcacagcaggctgcaagaagtgcaaagacaagattgcgaaggggatg
gtgcgtattgcaaaggtggtccccaaccctttcaccgagtctgggggggacatgaaggag
tggtaccatgtgaagtgcatgtttgagaagctggagagggcacgggccacaaccaagaaa
attgaggatctgactgagctggaaggatggcaggagcttcaggatgctgagcgggacctt
atcaaccagcacatcacagaactggctaataaaacagccaccaccccaaagaagaaagtg
actgtccaggccaaactgtcacctgctgggcaggtcatctcctccagcaagttaccaaca
gctgggcccagttcggcaccacggaagtttccaggatttacagcaacaaaggcagagtca
acagatgatgctccttccactgatggaccatctgcacagtcatgtgacctgagccacaag
gactgctcactgcgagagttccggaagctgtgtgccaacattgcggacaaacccagctac
aatgtgaagacccagatcatccaggacttcctgtacaagggggcaggcggagatggcttc
catggagacacatatctgacagtgaaactgctgttgccgggggtgattaagagtgtttac
aacctgaatgataaacagattgtcaaaatctttagtaaaatctttaactgcaacttagaa
gagatggtgcaagatctggaacagggtgatgtttctgagactgttcggatcttctttgaa
gctagttgtacctttctggcagctgctaagagcacgctttctatacaggaggtggatgcc
ttcttacaacatctgtccaaactaaccaaggaggatgaccagcagaggttactacaggac
atggcctccaggtgcacggcaaatgacctgaagtgcattatccggttgatcaaacatgat
ctaaaaatgaatgctggggctaaacatgtgctggatgcattggacccaaatgcctacgag
gcatttaaagcttcccgtaaccttcggaatgtggtggagcgtgtgctgaaaaatcaacag
gatgaagagaagatgccagggatgaagcgatcactaagtgtgaaggcatcccttatgacc
cctgtccaaccaatgttggcagaggcctgcaagtccattgagtatgccatgaagaagtgt
ccaaatgggatgtacgctgaaatcaaatatgatggagaacgagtgcaggtgcacaagagc
ggagagagcttcagctacttcagccgtagcctgaagcctgtactcccccacaaggttgct
cactttaaagattttattcccaaggcctttcctggtgggaacagcataattttggactct
gaggttcttctgattgacaccaatactgggaagcccctcccctttggaaccctgggcgta
cataagaaagctgccttccaggatgccaatgtctgcctgtttgtctttgactgtatctac
tttaatggagtcagcttgatggacaggcctctcattgagcgacggaagttcctccatgac
aacatggtggagattccccaccggattttgttctcggagatgaagcatgtcactaaagct
tcggaccttgcagatatgattacacgggtgatccgagagggcttggaaggactggtacta
aaggatacaaagagtctatatgagccaggcaaacgacactggctgaaggtgaagaaggat
tacctgaatgagggagccatggcggacagtgctgacttgatggtgctgggagctttctat
gggcaaggaagcaaaggcggaatgatgtccatcttcctcatgggctgctacgatcccagc
tgcggaaagtggtgcacagtgaccaagtgtgctggtggccatgatgatgccacgttggcc
cgactacagaatgaactggacatggtgaaaattagcaaagatcccagtaaaattcccagc
tggctgaaaatcaacaaaaactattatccagactttatcgcccgagacccaaagaaagcc
ccaatatgggagatcacaggagctgaattctcaaaggctgaagcacacactgccaatggc
atctccattcgcttccccagatgtactcgtatccgtgacgacaaggattggcagaccgca
accaacctacagcaacttcaggagctgtaccgagtgtccaaggagacgttggatacgaat
ctgctgactagcttatcaaaggggactgatgactcctctgggggcagtaatggagacact
gaagacagctcaaaaccctccactcctggcatctccaaaccatctagttcccggggctcc
tccaaagggtccacagccaagtcaccaggcaaagagcaaaagaaacccaagagccagcaa
ggtaccagtagctcagcctggaagtctcccactgaagaaggggtggacccaactgctgga
aaaggggtgaagaggaaactgataacgccggagcaaaacgggaaaaagatgaaattgtcc
ggacctgtgagcagtggtgagaagaccaagtcctcatctttgtcagcccagtccatagca
tcttcccaacacaagacgctgttggacattttcacaggggtcagactgtacctgccgcca
tcagtagaggacttcagcaaactgcagcgctatttcattgcttacgatggtgaccttgtc
ccagagtttgacacttctggtgccacgcacacagtgagtgacctggagggaaactccaat
gccaagcgagtctcccccaactggatttgggagtgcgtgaagaagcgccgtgtggttcct
ccctgctga
DBGET
integrated database retrieval system
