Larimichthys crocea (large yellow croaker): 104919232
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Entry
104919232 CDS
T04659
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104919232
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104919232
09142 Cell motility
04820 Cytoskeleton in muscle cells
104919232
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lco04147
]
104919232
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104919232
Exosome [BR:
lco04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104919232
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104919232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104919232
NCBI-ProteinID:
XP_019117675
LinkDB
All DBs
Position
XII:complement(14364156..14391582)
Genome browser
AA seq
1665 aa
AA seq
DB search
MGRPMSVVPLILFAVMLIGTGAQDCVCNRRSRCYCEGMKGSRGDRGFAGNQGPPGTTGRP
GSNGHAGPMGPKGNTGPDGPVGPKGDPGPEGKEGFAGSHGLPGIPGLQGPLGPSGEPGCN
GTDGDDGYPGVPGNHGIDGYPGQPGLPGPKGESQHFIDVMQGVQGPPGREGKLGYSGVPG
NTGPPGDPGARGSDGFPGRSGAPGAKGQEGIGRVPGPRGPKGTQGLQGAPGPPGRIKEFL
MGSLESKGAKGDTGDVGVKGCKGALGDPGNSYYRGAKGDKGQEGPEGEPGKDGVPGLPGF
VGKPGRRGDPGYPGTPGGTGEKGNRGPTGPPGQIVNKGYHGDLGPPGQPGLPGRQGIVGF
PGPRGPPGHASGIYQPGPHGPTGFPGPKGDPGEPGNIYTGLSGPDGDDGDPGPAGDPGLP
GPPEDRTNRTLKGHPGMKGVSGLLGPIGYDGLFGMKGQKGEPCYVCTGSGLPGPPGPRGL
PGIPGYNQGPGAKGDPGFPGPRGLPGGQGLIGERGNPGPPGQRGDSSSYNLPGIKGERGE
PGQHGRPGAGGLTGTPGLPGRKGHQGSKGDSYPGRGAEGDHGLQGPPGLLGRPGPDGYPG
PVGYGPAGFPGSKGEVGVPGLPGQPGVPGQKGEPGHIHIKGPPGLPGFKGLPGAPGRPGN
HGVSGAPGIPGFQGQKGEKGGTVYPGSPGIPGERGDKGQSGLPGYPGRGLPGRPGPQGPP
GPPGLKGDGGPGYPGPQGPPGLPGDDGAQGPVGDPGIPGLPGNPGSFGKPGFPGEKGSKG
SVGPPGVPGTKDSCKGLPGPAGPPGPDGSPGHPGLNGSPGEKGNTGLTGYGRPGFPGEPG
LIGLSVPGSRGLPGLKGIKGQNGLPGQPGLRGDPGPDGEPGYGPEGLPGIPGPPGQIGDQ
GPDGAIGPRGPPGMDGEQGPSGPRGPQPPHALDVTGPSGDPGELGYPGPSGCRGANGTTG
PKGQRGIEGAPAGPGPKGTPGEPGFDAPEFAQGNRGPAGAPGDPGIRGFPGLKGIKGDQG
IPGEPGPHGAPGTTGGKGAKGEPNYYGYGPPGPVGQKGEPGVTNNVKGQKGEPGVSGPAG
LPGFSGAKGNPGPVGQNGPPGNQGPGGLDGLPGSKGLPGPKGLAGNSGPPGVSGIPGPKG
NQGRDGIPGPPGQKGETSILGGPPGARGNTGQPGPPGNHGPPGLSVPGSPGSIGDRGLIG
LPGISGPRGLPGREGACIPGLKGYRGRPGDPGYHGRPGLPGPRGPTLLLPELKGDTGDQG
LPGDNGHKGPPGDPGPRGPPGDNGRPGEKGPRGDSGPLGIQGPLGYPGDPGYISGPPGPP
GPKGFPGRPGLKGETGFGKVIYEPGPPGLPGSIGNRGPPGITGPSGRTGLPGQQGVKGQR
RSGPVGQPGFTGHKGDKGRAGLPGPDGRIGDPGHKGSPGLPGRGAPGFVDSFLIARHSQS
IHIPDCPQGTSLMYSGYSFLFINGNERAHGQDLGTMGSCLPRFSTMPFLFCDTESNCRYA
SRNDYSYWLSTDTPMPANMVSITGEKLASYISRCSVCESTSNVIAVHSQTTLLPACPRGW
ETLWNGYSFVMQTGAGAEGSSQPLVSPGSCLESFRQVPFIECHGRGTCNYYPDSYSYWLA
SLDPNSMFSKTIPQTVKGPSLQSVISRCRVCRKLYPGTDNRRGDN
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atggggaggccaatgtctgtagttcctctgatcctgtttgctgttatgctgatcggcact
ggggcccaagattgtgtgtgcaatagaagatcgaggtgctactgtgagggaatgaaaggc
agcaggggagacagaggttttgcaggaaatcaaggtcctccaggtacaactgggcgtcca
ggatcaaatggtcatgctggacctatgggaccaaagggcaacactgggcctgatggacct
gtcgggccaaaaggcgatccgggacctgaaggcaaagaaggatttgctgggtctcatggt
ttgccgggtatcccaggtttacaaggacctttggggccctcaggggaaccaggctgcaat
gggacagatggtgacgatggatatcctggtgttcccgggaaccatggcattgatggatat
ccaggtcaacctggtctgcctggacctaagggtgaatctcagcacttcattgacgtaatg
caaggagtacaagggccacctgggagggaaggaaagctgggatattcaggtgtccctgga
aacacagggccaccaggggaccctggagcacggggctctgacggatttcctggtcgttca
ggggccccaggagctaagggtcaagaaggcataggtagagttccaggacctcgtgggcca
aaggggacacaaggactacaaggagcgccagggccaccaggtcggattaaagagtttttg
atggggagtcttgagtcaaagggcgcaaaaggagacacaggagatgtaggggtaaaaggc
tgcaagggtgcactcggagaccctggtaatagctactacagaggagcaaaaggagacaaa
ggacaggaaggtccagaaggagagccaggaaaagatggtgtgcctggactacctggattt
gtgggaaaacctggccgcagaggtgatccaggatatccagggacaccaggagggacgggt
gaaaagggaaataggggtcccactggtccacctggacaaatagtaaacaaaggataccat
ggagatcttggtcccccaggccaacctgggcttcctgggcgtcagggtattgtggggttt
cctggacctcgtggacctccaggccatgcatctgggatttatcaaccaggcccacatggt
cccactggctttccaggccccaaaggggaccctggagagccaggcaatatatatacagga
cttagtggtccagatggagatgatggtgatccagggcctgctggggatccgggcctacct
ggtcctcctgaagatagaactaacaggactctcaagggtcatccaggaatgaagggagtg
agtggtttacttggacctatcggatatgatgggctgtttggaatgaaaggacagaagggt
gagccctgttatgtgtgcactgggtcaggactcccaggaccacctggtccccgtggtcta
cctggcatccctggctataatcaaggaccaggtgctaaaggtgatccaggcttcccagga
cctagaggcttacctggtggacaaggtctgattggggaaaggggaaatccaggccctcct
gggcaaaggggagactcatcttcctacaacctccctgggattaagggagaaaggggagaa
ccagggcagcatggtaggcctggtgcaggtggccttactggaactcctggattaccaggt
cgcaaaggtcatcaggggtctaagggggattcgtatcccggccgtggtgcagagggagat
catggtttgcaaggtccaccagggcttttaggcagaccaggaccagatggctaccctgga
ccagtgggatatggaccagctggatttccaggaagtaagggagaagttggtgttcctgga
ctgccaggacaacccggagttccaggccagaaaggggagcctggtcacatccacatcaaa
ggacctccaggtctacctggatttaaaggtctgcctggagctcctggaagaccaggaaat
catggagtatcaggtgctccaggaataccaggttttcaaggacagaagggagagaagggt
ggcacagtatatcctggaagtcctgggatcccaggagagagaggtgacaaggggcagtca
ggactaccaggctacccaggaaggggcttgcctggtcgcccaggtcctcagggccctcct
ggtcctccaggattgaagggtgatggtggccctgggtaccctggtccccaaggaccccca
gggcttccaggagatgatggagctcagggacctgtaggagatccagggatacccggccta
cctgggaacccaggatcttttggcaaacctggttttccaggagaaaaaggaagcaaaggt
tctgtaggcccccccggagtacctggtactaaagattcatgcaaaggtttacctggacca
gcagggccaccaggaccagatggttctccaggacatccaggacttaatgggtcacccggt
gagaaggggaatacaggtttgacagggtatggtcgtcctggcttccctggtgagcctggc
ctcattgggctatcagtgccgggttcacgtgggctccctggactaaaagggatcaaggga
caaaatggcctccccggtcaaccaggactgagaggagatcctggaccagatggggaacca
ggatacggaccagaaggattgcctggaattccaggaccgccaggccaaataggtgaccag
ggaccagatggagccataggtccgcggggtcccccaggcatggatggggaacaaggtccc
agtggtcctcgcggccctcaaccaccacatgcattagacgttactgggccctcaggggac
cctggtgaactcggttaccctggtccatcaggttgtcgtggagctaatggaactactgga
ccaaaagggcagagagggatagaaggagcaccagcaggccctggaccaaaaggaacacca
ggtgagccaggttttgatgcaccagagttcgcgcaaggaaatcgaggacctgctggagct
ccaggagacccgggtatcagagggtttccaggcctaaaggggataaaaggagatcaagga
attcctggagagccaggtccacatggtgcaccaggtacaactggtggcaaaggagctaaa
ggagagccaaactactatggatatggacctcctggaccagtaggacaaaagggtgaacca
ggagtgaccaataatgtgaagggtcagaaaggtgaacctggtgtttcaggacctgcaggc
ctaccaggattcagtggagccaaaggaaacccaggaccagttggacaaaatggtccacca
ggcaatcaagggcctggaggtttagatgggcttccaggaagcaagggactgccgggacct
aaaggactggcaggtaactcaggtccacctggagtcagtggtattccaggtcctaaaggc
aaccagggccgggatgggatccctggaccaccagggcaaaaaggagagactagcatacta
ggagggcctcctggcgcacgtggaaacacaggtcagccaggtcctcctgggaaccatggc
ccccctggcctatctgttccagggagtcctggatcaataggagacagaggacttataggt
ctacctgggatctctggtccaagaggactgccaggaagagaaggggcttgtattcctggg
ttaaaaggataccgtggtcgtcctggtgatcctggttaccatggtcgtcctggcttacct
ggcccccgaggtcctacattactgttacctgagttaaaaggagacacaggggaccaaggt
cttccaggagacaatggccataaaggacctccaggagatccaggccctcgaggaccacct
ggtgacaatggcagacctggagaaaagggaccaagaggtgattctggtcctcttggaatc
caagggccccttggttacccaggagaccctggatacatctcaggcccgcctggtccgcct
ggaccaaaaggttttcctggacgacctggcctcaaaggtgaaacaggatttggcaaggta
atatatgaaccaggacctcctggtttacctggttccattggcaatcgaggacccccagga
attactggaccatcaggacgcacgggacttccaggccagcaaggcgtcaaaggacagcgt
cgatcgggcccagttggccagccaggttttactggccacaaaggagacaaaggaagagca
ggattgccaggtccagatggcagaattggagacccaggccacaagggttctccagggtta
ccaggcaggggtgctccaggttttgttgacagtttcctgatagctagacatagtcaaagc
atccatatccctgactgtcctcaaggaactagcctcatgtactctggttactccttcctc
ttcatcaacggaaatgagagagctcatggtcaggaccttggcaccatgggaagctgtctc
cctcggttctccaccatgcccttcctgttctgtgacacagaaagtaactgccgctatgct
tctcgtaacgactactcatactggttgtccactgacacacctatgcctgccaacatggtt
tccataacaggagaaaagctggcctcatacatcagcaggtgctcagtgtgtgaatccacc
tccaacgttatagcagtccacagccagacaactctgctacctgcctgtcccagaggttgg
gagactctgtggaatggatactcatttgtcatgcaaaccggtgctggtgcagagggctcc
tcccagcccctggtttcgcctggctcatgtctggaaagcttccgccaagtgcccttcatc
gagtgtcacggcaggggaacatgtaactactaccctgattcctatagttactggctggcc
tctctagaccccaacagcatgttcagtaaaaccattcctcagacagtgaagggaccatct
ctgcagagtgtcatcagccgttgtcgagtctgtaggaaattgtatcctggcacagataat
aggcgtggggacaattag
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integrated database retrieval system
