Larimichthys crocea (large yellow croaker): 104925189
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Entry
104925189 CDS
T04659
Name
(RefSeq) protocadherin-16
KO
K16507
protocadherin-16/23
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lco04515
]
104925189
Cell adhesion molecules [BR:
lco04515
]
Cadherins
Cadherin related
104925189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_3
Cadherin_2
RET_CLD1
Cadherin_pro
Cadherin_4
TMEM154
CADH_Y-type_LIR
Cadherin_C_2
Big_9
Motif
Other DBs
NCBI-GeneID:
104925189
NCBI-ProteinID:
XP_019125979
LinkDB
All DBs
Position
XXII:7258560..7341054
Genome browser
AA seq
3303 aa
AA seq
DB search
MPLTSKGSRRRPWVSGPCMCSSLLRWKPLFYFCIGLVLSQSTAVLGALELQLDEEQPTGT
IVGDISAGLPPGETASLYFISDHEGTGVGSDLNIDETTGIITTARRLDREQRDHYSFIAV
TMTGITIEVSITVNDINDHAPVFPKKKAVLKIPEHTAVGTRFSLEPATDADKDQLTTQGY
AIREGNVGQAFRLETKRAANKVLYLDLVVNGLLDREKRSSYTLVVEAFDGGSPKRMGSMT
LEVTVTDINDHAPLFNQSRYHAIISESLPQGSSILQVFATDEDEGDNGLVLYEINRRQSD
PDRYFVIDVKSGVITLNRPLDFELKRVHELVVQARDNASHPEVTNAFVTIHVRDYNDNQP
TMTIIFLSEDGSPRISEGAQPGQYVARISVTDPDYGEYANVNVSLEGGDGKFALTTKDSI
IYLIYVDQVLDREERDSYDLRVMATDSGTPPLRAESSFTIQVTDVNDNPPLFDQQAYRQT
IPEVVYPGSFVLQVTARDKDQGPNGDVRYSLLKGKNSHSDWFSIDPVTGIITTATALDFE
SEPAPSVTVIATDSGRPPLSSTAKVDIVLQDVNDNTPVFSSSFYNASIKENTPAGTCFLE
VSATDEDRGSFGAISYTLGPGTGSAVPTHFTIDKESGQICTRTSLDRDEGLEKFDLTVTA
TDGGGLSSVARVRVSVVDINDNRPAFYPVLYTVSLSTHSAPGTSVVKVTANDPDAGENGR
VTYRTVPGGGSNFFTLNKDTGVISLSRSLHGKANTVISMVISAEDGGGLTAPVNARVNVS
VVAGSVASPVFEQAQYFFTVSEDVLRGTAVGVVRASAKTGVSKNIFYSISSGDPDGYFTV
DSASGTIRTALPLDHETCSSLDLEIQARSGSPPAYGTSRVRITISDINDNAPTFLPSSSE
SLLLPEITKMGTVIYTIQATDKDSGHNGQLSFDLVSAGGSSGQRTFGVDRGSGEVRLIGS
LSYESVPRYDLQVVAKDGGAPQLSSTFTLVVHIQAQDAQGPNFDTLTYRVELRENTPLNT
RFLQVRALNTEANGNGGSSSSSSSSPISYRLRPDGDAAGFGIMPDSGWLFVRSSLDREVK
DMYLLTVLATSGPGGAGRTGSATVRVTVTDENDNSPRLSQERVFLAVRENLLAGTGFGRV
SATDRDAGLNARLTYRLLHTDRHFQINSQTGEISTRVALDREQQSSYQLVVVVQDGGTPP
RSATGTAHITVLDENDHAPIFTHARPDRELLLQVMEGLPSGTVLGTVTAKDPDEGENGTV
FYSLSGPRAERFSLNPTSGELRSASPLRWAERAEYTFTVTAADHGSPGLSSTCQLQIQVL
SSSRSNPKPNMLSMILNTVEGAAPGSIIGSVRRHDQQESSLLDGQVTYLVVGGNDRDGTF
MVDRLKGDVYLVRELDYEKESKYTLHIEVSDFSQAFPSSHLVQLDIIVQDSNDHSPQFTE
DPVTIVIQENIEPGASIYTFQALDQDGSGPNSELLYSIEHYWPDTPELLILDSSSGVLTL
GQKLDRESTPSLYLVVRATDQAVDPSQRRWGSVTARVFVTDENDNAPVFSSPSAVSVMED
QPVGFVILYMMARDEDEGENGRVSYRIQTGNSAGRFSLNPNTGSLSILKALDREEQEVFN
LTIVAEDHGVPQLSTSQVLSVQVIDVNDEAPVFQHTEFEAQVMENKGPGTTVLTVTATDR
DQGSNGQVTYGGVTEEGFIINPVTGVITTTKELDTELRNHYTLTVYARDGGLPPNFAKAV
VRVEVQDVNDNAPVFAKQWYSLEVPENQAPVELCFLKATDPDSGPGGELEYRITAGDSDG
DFHLHTSTGALSTLRGLDRETRADYTLEVVATDRGSPALSATVTVEVKVMDVNDNSPVFS
KNSYSTEVSEDAAEGTKVLEVSAIDADDDLNGKVLYFLSREAHGAFTVDENTGVITTAAP
LDREKLASYSFHVFAVDLSPAAPRNTSAQVTVTVLDVNDNTPIFIQDPLVIEVSSKRSHR
VLATMKAEDKDFGANGSVFYRFAMPVKGFSINSLTGEIQATERLEDLTQAQRTLIVEAMD
QGSPAQSAQGVVVIYVKEVEYSGIRFSRNARDVSIQENALKGTAVAQAQAQHPDGTRQGI
SYSLFSGNRNQIFVISSSTGEISVHSSKGLDFEDSPKLRIVVKAETVSSTSFMAINLILQ
DVNDNRPRFQLQNYVAYMREAQGYEMPIIQVVAEDVDQGQNGQVTYSIQSSGVSGLFKID
PMTGSITTAAIMDREIFTQTKLVVTATDRGSPRLAGSATLTVIIVDQNDNSPTIPLHQEV
RIPENMLIGTEITLVTGNDVDSSPALSFSLQLDPTALGKFGIHRYSGGVSLTAPLDFEEK
TWYTLTVRATDSQHQTEANITILVEDINDNVPAFTHNLYQVTLAEHTPPGSAVVTVTATD
RDSGENGKITYRVMSSTQEGFYIDPNNGTLFINHRAEFDPERPSVSVVIEARDGGSPSLS
SLTTVQVQISDVNDNAPVFHQSEYRATVSEDTIPGSTVLTFEAFDSDLSRENCGFDFAIA
NGNEGNAFQIESSVRFLEGRGFQTVGTLLLAEGLDFETKPLYNLTVVVSDRGVPQRSSSV
AAMISIGDVNDNPPVFSRAEYTVSLSEGAAAGTEILRLTATDPDSTPNAEVQYTISSGDE
VNLFTMDQWTGALRLQRALDREHQSTHVVIIQATDGHGHFALAPVIVEVKDVNDNHPFFP
VEVLTASIRENQPANSAVTVLHAIDHDTGVFGHLKYYMLERSGAGKDSFSVDQNSGEIRS
RIPFDFEKINSFNFVALAVDSGNHSATVTVQVFVTGEDEYDPLFTSSDFSFDVPEGAKKG
QSIGQVQAHDEDGGVDGIVLYSLSTSSPFFDVNKTTGVIFLKLDGSGSGGSSGSGQSKQE
PRLMTLDVTAHSPLDASRTTTAQVTVDVTNTNFGLAPDVNILLISIIAVSLGFIVLLVVM
AVVIFLVKSRRRKKAQDAGNRTVASGTALQKLDDCNSGPGGERIYHQALPGYAGDQGGAG
GGPYTRGGSLDPSHSSGRGSAEAAEDDEIRMINEYPRVASITSSMQEHISARGPDSGIQQ
DADQLSDISCEPAALEGSTWFKGKKLGGSLSGTLLSGQLPVYRDEGGGYLGVGRGLNISL
PKDYAFPEDGKPSVDGSLTAIVASDEELRGSYNWDYLLNWCPQFQPLANVFTEIARLKDE
TAQQSQNPRQPFQTKHKMDPKPRIDPPPLITSVAHPGAMSVPPKVPVIGRTFPHLASLRR
SPISHEGSISSAAMSPSFSPSLSPLAARSPAVSPFGVNQGPSASMISTREPSLDQSPDHE
MRI
NT seq
9912 nt
NT seq
+upstream
nt +downstream
nt
atgccgttaacaagtaaagggtcaagacggaggccttgggtcagcggaccctgcatgtgt
tcgagtctcttgcgatggaagccactcttttatttctgcatcggccttgttctttctcag
tctacagctgtcctcggagcactggaactccagctggatgaagagcagccaactgggacc
atcgttggtgacatcagcgctgggttaccgccaggtgaaactgcaagtctgtactttatc
tcagaccatgagggcacaggcgttggcagtgatctcaacattgacgaaaccacgggcatc
attaccacagcacgccgtctggatcgtgagcagagggaccactatagctttattgctgtg
acaatgacaggaatcactattgaggtgtcaatcacagtcaacgacatcaacgaccacgca
cctgtgttccccaaaaagaaagctgttcttaagatacctgagcacacagcggtgggaaca
aggttttccctggagcctgcaacagatgcagacaaggaccaactgaccacgcaaggctat
gctattcgagagggcaatgtaggccaagctttcagactggagaccaagagagctgctaac
aaggttctgtatctggatctggttgtcaatggactgctggacagggagaaacgctcatct
tacacactggtcgtggaagcctttgatggaggctcacctaaaaggatgggatccatgacc
ctagaagtgactgttactgacatcaacgatcatgcaccactcttcaatcaaagcagatac
catgctattatctctgaaagtcttccacaaggcagtagcatactacaggtgtttgcaaca
gatgaggatgagggtgataatggtctggttctttatgaaatcaaccggcgtcagagtgac
cctgaccgttacttcgtcattgatgtcaagtctggggtcatcactctgaatagaccactg
gattttgaactgaagagggtccatgaactggtggtccaggccagggataatgccagccac
cctgaggtgaccaatgcttttgtgaccattcatgtccgtgactacaatgacaaccagccc
accatgaccatcatctttctcagtgaggacggctctccaaggatctccgagggggcccaa
ccaggccagtacgttgctcggatatctgtcaccgacccagactatggagagtacgccaac
gtgaatgtgtcccttgaggggggtgatgggaaatttgctcttacgaccaaggacagcatc
atctacctgatatatgttgaccaggtcttggacagagaggaaagggattcatatgacctc
agggttatggctacagactccggcactcctcccctcagagcagagtcatcttttaccatt
caggttactgatgtcaatgacaacccccctctgtttgaccagcaggcctacaggcagact
attccagaggttgtctatcctgggtcctttgttctccaggttactgccagggacaaggac
cagggtcccaatggggatgtccgatatagccttctcaaagggaaaaactctcactctgat
tggttttccatcgacccggtcacaggaatcattaccacagcaacagctctggatttcgaa
tcagagccagcgccaagtgtgactgtcattgcaacggatagcggtcgtccgccactgtca
tccacagcgaaggtggacattgtgctgcaggatgttaacgataacacaccagtgttttcc
agcagtttctacaatgcctccatcaaggagaacaccccagctgggacctgcttcttagag
gtgtctgccacagatgaggatcgtggttcttttggcgccatatcctacaccctgggtcct
gggactggaagtgcagtaccaacccacttcaccatagacaaggagtctggccagatttgc
acccgcacgtctctcgaccgggatgaaggattggaaaagtttgacttgaccgtcactgca
acggatggaggtggtttgagctcagtagcccgtgtgcgggtctcggtggtggacatcaat
gacaaccgtcctgccttttatccagtcctctacacagtcagtcttagtacccatagtgcc
ccaggaacctctgttgtcaaggtaacagcgaatgacccagatgctggggaaaatggcaga
gtcacctaccgcacagtacctggaggaggttctaatttcttcactctcaacaaggacaca
ggcgtgatttctctatcgcgctcgctccatggcaaagccaacacggtaatctccatggtg
atatcagctgaggacggcggtggtctgacggcgccggtcaatgccagggtaaacgtgagc
gtggtggcaggctcggtggcgtctcccgtgtttgaacaggctcagtatttcttcactgtg
tcggaggacgttctcagggggacagcggtgggagtggtccgcgcttctgccaagacaggt
gtgtctaagaatattttctactccatttcctctggcgaccctgatggttacttcacagtg
gacagtgcctctggtaccattcgcactgcccttcctctggaccatgaaacctgttccagt
cttgatctggagatccaggcacgctccggttctcctccagcgtacggaaccagccgcgta
cgaataaccatttcagatattaatgacaacgcccccaccttcctcccctcctcatcagag
tcccttttattacctgagatcaccaaaatggggactgttatctacaccatccaggccaca
gacaaggactccggtcacaacggtcagctcagcttcgacctggtctctgctgggggaagc
agtggccagaggacgtttggtgttgaccggggcagcggggaggtgcgtctgattggtagc
ctgtcatatgaaagcgtcccacgttatgaccttcaggtagttgccaaggatggcggggca
cctcagcttagttccaccttcacccttgtggtccacatccaagcgcaagatgcacaaggc
cccaactttgacaccctgacatatcgtgtggagcttcgagaaaacacacctctcaacaca
cgtttccttcaggtccgagcactcaacacagaagctaatgggaatggtggaagctcctcc
tcatcttcctcctcccctatttcctaccgtctgagacctgacggtgatgccgctggtttt
ggcatcatgccagatagcggttggctgtttgttcgcagctctctggaccgagaggtcaaa
gacatgtacctgttaactgtcttggcaacttcaggcccaggaggagcggggagaactggc
agtgccacggtcagggtgacagtaaccgacgaaaatgacaattccccaagactgagccag
gagagggtattcctcgctgtcagagagaatctgctggcaggaaccggctttggcagggtg
tctgcaaccgacagagatgcaggccttaatgctcgactcacctacaggctgctgcacacg
gacaggcactttcagattaactcacaaacaggtgagatcagcactcgcgtcgccctggac
agagagcagcaatccagctaccagcttgttgtagtcgtacaagacgggggcacgcctcct
cgcagcgccactggcacagctcacatcactgtgctggatgaaaacgaccacgcacccatt
tttactcatgcaagaccggacagggaactgctccttcaggtgatggaggggcttccatct
gggacagtcctagggacagtgacagctaaagacccagatgagggagagaatgggaccgta
ttctactctttatcaggccccagagcagagcgtttctccctgaacccaaccagtggcgag
ctgagaagcgcctctcccctgagatgggcagagcgagccgagtacaccttcaccgtgacc
gctgctgaccacggttcaccaggcctcagctccacctgccagctgcagatacaggttctc
agctcctccaggtccaaccccaagcccaacatgctctccatgattctgaacacagttgaa
ggggctgcaccgggctccatcattggctctgtccgccgacatgaccagcaggaatcttct
ttattggacggccaggtgacttacctggtagtggggggtaatgaccgagatggtactttc
atggtggaccgcttgaagggtgacgtgtacctggtgcgtgagctggactacgagaaggag
tcgaagtacacgctgcacatagaggtgtctgacttctcccaggcatttcccagcagccac
ctggtgcagctggatatcatcgtgcaggacagcaatgaccattcaccgcagttcacagaa
gatcctgttaccattgtgatccaagagaacatagagccaggagcttccatatatacgttc
caggctttggatcaggatggcagtggacccaacagtgagctactttactccatcgagcac
tactggcctgacacacctgaactcctgatcctagactcctccagcggagtcctgaccctg
gggcagaagttagatcgtgagtcaacaccgtccctctacctggtggtgcgagccacagac
caggcagtagatccttctcagaggcgctggggttcagtcaccgcccgggtctttgtgaca
gacgaaaacgacaacgctccagtcttcagctcaccgtctgcggttagcgtcatggaggat
cagcctgtaggatttgtgatactttacatgatggctagagatgaagatgaaggagaaaat
ggcagagtgtcatacagaatccagacaggcaacagcgccggtcgcttcagtctgaacccc
aacactggttctctctccatcctgaaggctttagaccgggaagagcaggaggtcttcaat
ctgaccattgtggctgaggatcatggtgtacctcagctttccacttcccaggtgctgtcc
gtacaggtgattgacgtgaatgacgaagctccggtgttccagcacacagagtttgaggcc
caggtgatggaaaacaaaggaccaggaacgactgtattaacagttactgccacagaccgg
gaccaaggctctaatggccaagtgacatatggaggtgtgacagaggaaggcttcatcatc
aaccctgtgacaggagtcatcaccaccacaaaggaactggatacagagctacggaaccac
tacacactcactgtgtatgcaagggatggagggctgcctcctaactttgccaaggctgta
gtccgcgtggaggtgcaggatgtgaacgacaatgctccggtctttgcaaagcaatggtat
agtctggaggtgccggagaaccaagcccctgtagagctgtgctttctcaaggccacagac
cctgactcaggtcctggtggagagctggagtacaggatcactgctggggactctgatgga
gatttccacctccacaccagcacaggagctctttccaccttacgtggcctagatagagag
acgagggctgactatactctggaggtggtggccacagaccgagggagccccgctcttagc
gctactgtcacagtggaagtgaaagtgatggatgtgaatgacaacagccctgtctttagc
aagaatagctactctactgaagtgtctgaggatgctgcagaggggaccaaagttctggag
gtgtcagccatagatgctgatgatgacctgaatgggaaggttctatatttcctgagtcga
gaggcgcatggagcattcactgtggatgagaacaccggtgttatcaccacagcagcacct
ctggatcgggaaaaattggcatcatacagcttccacgtgtttgctgttgacctttcacct
gctgcacccagaaacacctccgctcaggtgacagtcaccgttttagatgtcaatgacaac
acccccatcttcatccaggatccgctggtaattgaagtgtccagcaaacgttcccaccgg
gttctagcgaccatgaaggctgaggacaaggactttggagccaacggttctgtgttttac
cgtttcgcgatgccagtgaaaggcttcagcatcaactccctaactggggagatccaagcc
actgagcgactggaggatctcacccaagctcagaggactctgatagttgaggccatggac
cagggcagtccagctcagtctgcacagggagtggtggtgatttacgtgaaggaggtggag
tacagtggcatccgcttctctaggaatgccagagatgtcagcatacaggagaacgcttta
aaaggcacagctgtggctcaagctcaggctcaacatccagatggtacacgtcagggtatc
agctacagcctcttcagtggaaacagaaatcagatctttgttatcagctcttcaacaggt
gaaatcagcgtgcacagctccaaggggctggactttgaagacagccccaaactccgtata
gttgtaaaggctgaaacagtgtcttccacatctttcatggctataaacttgatccttcag
gatgtcaatgacaaccgtcctcgcttccagctgcagaattatgttgcctacatgagagaa
gcacagggctatgaaatgccaatcatacaggtggtggctgaggatgtggatcagggccaa
aatggccaggtgacctattccatccagtcatcgggtgtgagcggcctgttcaaaatcgac
ccgatgacaggaagcatcaccacggccgccatcatggaccgtgagatctttacccagacc
aagctagtagttacagcaactgatagaggaagtccacgactggctggttctgccacatta
acagtgatcatcgttgaccagaatgacaacagccccactattcccttacatcaggaagtc
cgcatcccagagaacatgttgatcggcacagagatcactctcgtgacaggtaacgacgtc
gactccagtcctgcactctccttctctttgcagctggacccaacagctttaggcaagttt
gggattcaccggtacagcggaggtgtatcgctaaccgctcctctagactttgaagagaag
acgtggtacaccctgactgtcagagccacagacagccagcaccaaactgaggccaacatt
acaatactggtggaggatattaatgacaatgtacctgcatttacccacaatctctatcag
gtaactctggctgagcacacaccaccaggaagtgcagttgtcacagtaacagcaaccgac
agagactctggagagaacggaaagatcacctacagagtgatgtcatcaacccaggagggt
ttctacattgaccccaacaatggaaccctgttcatcaatcacagagctgaatttgaccct
gaacgtccatcagtgagcgttgttattgaagcccgtgatggaggctcaccttcactctcc
tcgcttaccaccgtccaggtccaaatctctgacgtcaatgacaatgctcctgtgtttcac
cagtcagaatacagggctactgtttctgaggataccattccagggtcaacggttctgact
tttgaggcctttgacagtgacctttctcgagaaaattgtggctttgactttgctatcgcc
aatgggaatgaaggaaatgcattccaaattgaaagcagtgtaaggttcctggagggacgg
ggcttccaaacagttgggactctgctgttggctgagggacttgactttgaaaccaagcca
ctttacaacctaacagtggtggtgtcagaccgcggtgtgccccagagaagctctagtgtt
gctgcaatgatatctattggtgacgtgaatgataatcctccagtgttcagcagggcagaa
tatactgtctcactgagtgagggagctgcagctgggactgagatcctacgactgactgct
acagatccagactcaactccaaacgcagaagtccagtatactatcagctctggcgatgag
gtgaacttatttaccatggaccagtggactggagccttgcggcttcaacgagcactcgac
cgtgaacaccagtccacacatgttgtcatcatccaagccacagatggacatggtcacttt
gcgctagctccagtcattgttgaagtgaaagatgtaaatgacaatcatccattcttccct
gtggaagtcctgacagcaagtatcagagaaaaccaaccagcaaactcagctgtgacagtt
ctccatgccatagaccacgacacaggggtttttggccacctgaagtattacatgttggaa
aggtctggagcaggaaaagatagcttcagtgtggatcagaattctggagaaatcagaagc
aggattccctttgactttgagaagatcaactcctttaattttgtagcactggcagtagat
tcaggcaaccattcagccactgtaactgtacaggtgtttgtcacaggtgaggatgagtat
gatccactcttcacatcctctgatttctcctttgatgtcccagagggagctaagaaaggc
cagagcattggccaggtccaggcacatgatgaggatggaggagtggatggtattgttctc
tattctcttagcaccagctctccattctttgatgtaaacaaaaccactggggtgattttc
ctgaagttggacgggtcaggcagtggtggtagcagtggttcgggccagtccaaacaggaa
cccaggctgatgaccctggatgtcacagctcacagccctctagatgcatctcgcaccacc
actgcccaggtcacagtcgatgtcacaaacaccaactttggcctggcacccgatgtcaac
atcctgctgatcagcatcattgctgtgtctcttggttttatcgtgttgcttgtggtcatg
gctgttgtgatattccttgtcaagtcacgaaggcggaagaaggcccaggatgctggaaac
cgaactgttgcctctggaactgctctgcaaaaattggatgattgcaactcaggcccagga
ggggagaggatctatcaccaggccttgccaggctacgctggagatcagggtggggctggt
ggtggtccctacactagagggggctctctggatccctctcactccagtggaagagggtca
gctgaagcagcagaggatgatgagatcaggatgataaacgagtacccccgtgtcgcttcc
atcacttcgtccatgcaggagcacatctcagccagaggaccagactctggaattcagcag
gacgctgaccagctctctgatatctcctgtgagcctgcagctttagagggcagcacctgg
ttcaaaggaaagaaactgggaggcagtctcagtgggaccttgctctctggccagctccca
gtctatagggacgaaggaggtgggtacctgggagtaggccggggcctcaacatttccctg
cccaaggattacgccttccctgaagatggaaaaccttcagtggatggttccctcacagct
atcgtggccagtgatgaggagcttcgcggaagttataactgggattacctgctcaactgg
tgccctcagttccagcccctggctaacgtgttcacagagattgccaggctgaaagatgaa
actgctcagcagagccagaaccctcgccaaccctttcaaacaaagcacaaaatggatcct
aaacctagaattgaccctccaccactcatcacttcagtggcccacccaggggccatgtca
gttcccccgaaggtccctgtgattggacggacattcccccacttggcctcactccgcagg
tcccctatcagtcacgagggatccatttcatcagcagcaatgtccccaagcttctcccct
tctctgtcccctctggcagctcgatcgccagctgtttctccctttggagtcaaccaaggg
ccttcagcatccatgatcagcaccagggagccctcactggaccagagtcctgatcatgag
atgagaatatga
DBGET
integrated database retrieval system
