Larimichthys crocea (large yellow croaker): 104926829
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Entry
104926829 CDS
T04659
Name
(RefSeq) thyroid hormone receptor alpha isoform X1
KO
K05547
thyroid hormone receptor alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
104926829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lco03000
]
104926829
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
lco03310
]
104926829
Transcription factors [BR:
lco03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
104926829
Nuclear receptors [BR:
lco03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
104926829
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
104926829
NCBI-ProteinID:
XP_019117246
UniProt:
A0A0F8AQQ5
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Position
XII:complement(10892384..10992792)
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AA seq
413 aa
AA seq
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MSSKQDSNSSEGEEKGWPDVPKRKSKNSQCSVKSMSALSVSVPGYIPSYLEKDEPCVVCG
DKATGYHYRCITCEGCKGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCIS
VGMAMDLVLDESKRVAKRRLIEENRQRRKREEMVRTLQTRPEPNTAEWELIRMATEAHRH
TNAQGSSWKQKRKFLPDDIGQGPMVPTSVGDKVDLEAFSEFTKIMTPAITRVVDFAKKLP
MFSELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAVKREQLKNGGLGVVSD
AIFDLGKSLAQFNLDDSEVALMQAVLLMSSDRSGLTSVEKIEQCQEAYLLAFEHYINYRK
HNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPNELFPPLFLEVFEDQEV
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcaagcaggatagcaactcatcagagggagaggagaaagggtggccagatgtg
ccgaagagaaagagtaagaacagccagtgttcggtgaagagtatgtctgctcttagtgtc
tctgttccagggtacatccccagctacttggagaaggatgagccgtgtgtggtgtgcggg
gacaaggcgaccggctaccactaccgctgcatcacctgtgagggttgcaagggtttcttc
cgcaggaccatccagaagaacctccaccccgcttactcgtgtaaatacgaaggctgctgc
atcatcgacaagatcacccgcaaccagtgccagctgtgccgctttaagaagtgcatctct
gtgggcatggccatggacttggtgttggacgagtcgaagcgcgtggccaagcggcgtctg
attgaggagaaccgacagaggaggaagagggaggagatggtgcggacgctgcagacgagg
ccggagccgaacacggcggagtgggagctgatccggatggcgaccgaagcccaccggcac
accaatgcccagggctccagctggaaacagaagcgcaagttcctgccggatgatatcggc
cagggtccgatggtgcccacttccgtcggagataaggtggacctggaagccttcagcgag
ttcaccaagatcatgacccccgccatcacgcgcgtcgtcgactttgccaagaaattgccc
atgttctcagagctgccttgtgaagaccagatcatcttgctgaagggctgctgcatggag
atcatgtcgctgcgcgccgctgtacgctacgacccggacagcgagacgctgacgctaaat
ggcgagatggcggtgaaacgcgagcagctgaagaacggcgggttgggcgtggtgtcggac
gccatctttgacttgggcaagagcctggctcagttcaacctggacgactcagaggtggct
ctgatgcaggcggtgctgctcatgagctcagaccgttcagggctgaccagtgtggaaaag
atcgagcagtgccaggaggcctacctgctggcattcgagcactacatcaactaccgcaag
cacaacattccccacttctggcccaagcttctgatgaaggtgacagacctgcgcatgatt
ggagcttgccacgccagccgcttcctccatatgaaggtggagtgtcccaacgaactcttt
cctccgcttttcctggaggtcttcgaggaccaggaagtgtga
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