Larimichthys crocea (large yellow croaker): 104927616
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Entry
104927616 CDS
T04659
Symbol
chd3
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 3 isoform X1
KO
K11642
chromodomain-helicase-DNA-binding protein 3 [EC:5.6.2.-]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104927616 (chd3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lco03036
]
104927616 (chd3)
Chromosome and associated proteins [BR:
lco03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
104927616 (chd3)
Chromatin remodeling factors
NuRD complex
104927616 (chd3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
HDA2-3
ResIII
HTH_23
DEAD
AAA_22
HMG_box
PHD_2
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
104927616
NCBI-ProteinID:
XP_019116871
LinkDB
All DBs
Position
XIV:complement(11126315..11171571)
Genome browser
AA seq
2112 aa
AA seq
DB search
MSSPLRSCEEDEGMVVNSEGGDFDEEDDDGDLDENASDINSPAAPRETATPAAPDEEPEI
SDREVPCRKKGRPKKKKDTKKKDKEGKPVKPRKRKKIDSDVDRDSDRERDYAENSDSVAS
DYGSGEKKKKRKHKERKEKKTKKKKKDDGDRDSSQEETTKQPMEQKTSAQLAKEWGLEDV
DHTFTEEDYRELTNYKAFSQFMRPMIAKKNPKIPMSKMMTILGAKWREFSSNNPFKGNAA
AVAAAAAAAAIAVAEQVSAATASPEPQLQPPPIRKAKTKEGKGPGYKKRSKSPRVPDKKK
AAAKAKKMAPIRIKLSPIGAKRKKSCSSDDMDEDESEQEDSSVHSSSVRSDSSGRVKKNK
RGRPAKKKKKNLLSPGPGEEEGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPE
LDKAPEGKWSCPHCEKEGIQWEAKDEDFEDFEEDSEDRVISEVSMGIPTGAEEEDDDHME
FCRVCKDGGELLCCDTCTSSYHIHCLNPPLPEIPNGEWLCPRCTCPPIKGRVQKILHWRW
GEPPPPIPVPPAPDAPPDAPLPPPMKGRAEREFFVKLTGQSYWHCTWITELQLEIFHSVM
YRNYQRKTDMDEPPSLDYGSGGEDENSVGKSEKRRAKDPQFAILEDKYYKYGIKPEWMMI
HRIINHSVDKKGTYHYLVKWRDLTYDQCTWERDDLEIPEFAIYKGNYWRHRDSIMKEDPD
KPRRMRSKNQEGEEESPASPVTDPTIKYEEQPDFVTSTGGTLHLYQLEGLNWLRFSWAQG
TDTILADEMGLGKTIQTIVFLYSLFKEGHTKGPFLVSAPLSTIINWEREFEMWASDFYVV
TYTGDKDSRAIIRENEFSFDDTAVKGGKKAFKLRREAPIKFHVLLTSYELVTIDQTALKS
IDWACLVVDEAHRLKNNQSKFFRRLNDYKIDHKLLLTGTPLQNNLEELFHLLNFLTPNRF
NNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKK
YYKLILTKNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVASMEAQKTPTGAYEGSA
LTKASGKLMLLQKMLRKLKDQGHRVLVFSQMTKMLDLLEDFLDHEGYKYERIDGGITGAL
RQEAIDRFNAPGASQFCFLLSTRAGGLGINLATADTVVIFDSDWNPHNDIQAFSRAHRIG
QANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTE
ELFKDEGEGMKNSSRDKVEEEGSVIHYDSTAIERLLDRSQDATDDSDVQNMNEYLSSFKV
AQYMVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLASKLGKGKRNRKPVN
YNDAAQEDQEWHADISDNQSEYSVGSEEEDEDFDDRPEGRRQSRRQLRNEKDKPLPPLLA
RVGGNLEVLGFNTRQRKAFLNAVMRWGMPSQDAFASQWLVRDLRGKTEKEFKAYVSLFMR
HLCEPVADGAETFADGVPREGLCRQPVLTRIGVMSLVKKKIQEFEHINGRWSLPELKPEV
SIDKTSSRASSPAVKTATPTPDASYNNTPCTSKPATPAPADKLEKNGKDAEKEEDKEEGE
AASDKEKVKEKDKEEGKEVDSNRTADPEELSSSTKETSQNASPGQKTEGKDESDLTEEEK
KETSETLTEERKEETKQDTEVKEEKSEGEKLAEEKEKDKETTEATDAKDKAEAADVKKEE
VKGEKDAGKDVRAAKEEAPKGNGRPPIERPRFMFNIADGGFTELHTLWQNEERAAISSGK
MNEIWHRRHDFWLLAGIVIHGYARWQDIQNDPQFAIVNEPFKSQANKGNFLEMKNKFLAR
RFKLLEQALVIEEQLRRAAYLNMTQDPSHPAMALNARFAEVECLAESHQHLSKESLAGNK
PANAVLHKVLNQLEELLSDMKADVTRLPATLSRVPPIAARLQMSERSILSRLASKGTETH
TPPPIPPGPYATPQNYGAPFTPAPPSTLHMGGANYSQMPPGSFISEAAAAAGATGGAAWG
AAGGPTAACQKTKEHDVVQRQRVVDLWKDGKSEGAIGQELRMPKSTVHSIIVKYRLSNTV
ENLPRNGRPKKP
NT seq
6339 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctcctctccggtcctgtgaggaagacgagggcatggtggttaattccgaggga
ggagattttgatgaagaagacgacgacggagacctagacgagaacgcaagcgacataaac
tcgccggcggcgcctcgggaaactgcaacaccagccgcgccagacgaagagccggagatc
tcagacagagaggtcccgtgcaggaagaaaggccgaccgaagaagaagaaggacaccaag
aagaaagacaaagaggggaagcctgtcaaaccaagaaaacgcaagaagattgacagcgat
gtagacagagactcggacagagagagggactacgccgagaactcggacagcgtagccagc
gactatggatccggagagaagaagaaaaagaggaaacataaagaaaggaaggagaagaaa
accaagaagaagaaaaaagacgatggggatcgagacagcagtcaggaggaaacaacgaag
caacccatggagcagaagacctcggcccagctggcgaaggagtggggtctggaggatgtt
gatcataccttcactgaggaggactacagggaactcactaactataaagccttcagccag
ttcatgaggccgatgatagccaagaagaatcctaagatccccatgtcgaaaatgatgacc
atcctgggggccaagtggagggagttcagctctaacaaccccttcaagggcaacgccgct
gctgtggcggcggccgctgcagccgccgcgatcgctgtcgccgagcaggtctccgcagcg
actgcctcgccggagccgcagctgcagccgccgccgatcaggaaggcgaagacgaaagag
ggcaaaggccctggctataagaagcgcagtaaaagtcctcgagtcccagacaagaagaag
gctgcagcaaaggctaaaaagatggcacccattcgcatcaaactgtcacctataggcgcc
aagaggaagaagagctgctcgagcgatgatatggatgaggacgagtccgagcaggaggac
tccagcgtccacagctcctcggttcgttccgacagctccggccgcgtcaagaagaacaag
cgaggacggccggccaagaagaagaagaaaaatctgttgtctccaggcccaggtgaggag
gagggcgacggctatgagacggatcatcaggactactgcgaggtgtgccagcagggcgga
gagatcatcctgtgcgacacttgtcctcgagcttaccacctcgtctgcctggagcccgag
ctggacaaagcccccgagggcaagtggagctgcccgcactgcgaaaaagagggaattcag
tgggaagcaaaggacgaggactttgaggatttcgaggaggacagcgaggacagagtgata
tcagaggtcagcatggggatccccaccggagccgaggaggaggacgacgaccacatggag
ttctgtcgggtgtgcaaagacggaggggagcttttgtgctgcgacacctgcacgtcttct
taccacatccactgtctaaacccgccgctgccggagatccccaacggcgagtggttgtgc
ccgcgatgcacgtgtccgccaatcaaaggacgtgtccagaagatcctccactggcggtgg
ggtgaaccgccacctcccatccccgttcccccggcccctgacgccccacctgatgcccct
ctaccgccacccatgaagggcagagccgagagggagttctttgtcaagttgactgggcag
tcttactggcactgtacctggatcactgagctgcagctggagatctttcactcggtgatg
tacagaaactaccagaggaagacggacatggacgagcctcccagcctggattacggttca
ggcggggaggatgagaacagtgtgggaaagagcgagaagaggagggctaaggacccacag
ttcgccatcctggaagacaagtactacaaatacggcatcaagcccgagtggatgatgatc
caccgcatcatcaaccacagtgtggataagaaggggacgtaccactacctggtcaaatgg
agagacctgacctatgaccagtgtacctgggagagagatgacctggaaatccctgaattt
gcaatttacaaaggcaactactggagacacagagactcaataatgaaggaggatccagac
aaacccaggaggatgaggagcaagaaccaggagggtgaagaggagtctcctgcctcaccg
gtcactgatccaacaataaaatacgaggaacagcccgactttgtcacatcgacgggtggg
acgctgcacctgtatcagctggagggtctgaactggcttcggttttcctgggctcagggc
acagacaccatcctggcagatgagatgggccttggcaagaccatccagaccatcgtcttc
ctctactcactcttcaaagagggtcacactaagggtccgttcctggtcagcgctccgctg
tccaccatcatcaactgggagagggagtttgagatgtgggcgtcagacttctacgtggtg
acgtacacgggagataaggacagtcgagccatcatcagagagaacgagttctcctttgac
gacacggctgtcaaaggagggaagaaggctttcaaactgaggagagaagctcccatcaaa
ttccacgtgttgctaacctcctacgagttggtgaccatcgatcagacggcgctcaagtcc
atcgactgggcctgtctggtggtggacgaggctcaccgccttaagaacaaccagtccaag
tttttcaggcgtctcaacgactataagatcgaccacaagctgctgctgacaggaactcct
ctacagaacaacctggaggagctgtttcacctgctcaacttcctcacacccaaccgcttc
aataaccttgagggcttcttggaagagtttgctgacatctccaaggaggaccagatcaag
aagctccacgacctgctgggacctcacatgctgcggaggctgaaggccgacgtcttcaag
aacatgcccgccaagaccgagctgattgtccgagtggagctgagccctatgcagaagaaa
tactacaagctgattctgaccaagaactttgaggctctgaactcgaagggcggcggaaac
caggtctccctgctcaacatcatgatggacctaaagaaatgctgcaaccatccctacctc
ttccctgtcgcctccatggaagctcaaaaaacccccactggtgcttatgaagggtcggcc
ctcactaaggcctctgggaaactgatgctgttgcagaagatgctgaggaaactgaaagac
cagggccatcgagtactggtgttctcacagatgactaaaatgttggacctgctagaagat
ttcttggaccatgaaggttacaagtacgaaagaatcgacggaggcatcacaggagcgctg
agacaggaggccattgatcgcttcaacgctcccggtgcgtctcagttttgtttcctgctc
tccacccgagctggaggtttaggcatcaacttggccacggcggacacggtcgtcatcttt
gactctgactggaaccctcacaacgacatacaggcgttcagtcgagcccaccgaatcggg
caggccaacaaggtgatgatctaccgctttgtgacgcgagccagcgtggaggagagaatc
acgcaggtggccaagaggaagatgatgctgacccacctggtggtccggccaggattggga
tccaaagctggctccatgagcaaacaggaactggacgacatcctcaagtttggaacagag
gagcttttcaaggatgagggagaaggtatgaagaacagttccagggataaagttgaggag
gagggcagcgtgatccactacgacagcaccgccatcgagaggctgctggaccgaagccaa
gacgccacagacgactcggacgtccagaacatgaacgagtacctcagctcctttaaagtg
gcccagtacatggtccgagaggaggataagattgaggagatcgagcgggagatcatcaaa
caggaggagaacgtggatccggactattgggagaaactcttgcggcatcactacgagcag
caacaagaggacctggcgagcaaactgggtaaaggcaagaggaaccgcaagcctgtcaac
tacaacgatgctgcgcaggaagaccaagagtggcatgctgacatttcagataaccagtcc
gagtattcagtgggctccgaggaggaggacgaggactttgatgatcgtccagaaggtcga
aggcagtcgcgtcgccagttgaggaacgagaaggacaaacctctgcctcctcttctggcc
agagtgggaggcaacctcgaggtgctcggattcaacacacgccagcgaaaggctttcctg
aacgcagtgatgcgctgggggatgccgtctcaggacgccttcgcctctcagtggctggtc
agagacctcaggggcaagaccgagaaagaattcaaggcttacgtgtctctctttatgcgc
cacctgtgcgagccagtggctgacggggccgagacgttcgcagatggcgtgccgagggag
ggcttgtgtcggcagccggtgctcacccgaatcggcgtcatgtctcttgtcaagaagaag
atccaggagttcgagcacatcaacgggcggtggagtcttccagagctgaagcctgaggtc
agcatagataaaacctcctccagggcctcctctcctgctgtgaagaccgccacacccacg
cccgatgccagctataacaacacaccttgcacctccaagccagcgacccctgctccagca
gacaagctggaaaagaacggaaaagatgcagagaaggaggaagacaaagaggaaggcgag
gccgcgtcggacaaagagaaagtaaaggagaaagacaaggaggaggggaaggaggtggac
agcaacaggactgcagaccccgaggagctttcctcttcgactaaagagacgtcacaaaac
gcgtccccgggtcagaaaaccgaaggcaaagacgagagcgacctgacagaggaggagaag
aaggaaacgtccgagactctgacagaggagaggaaagaggaaacgaagcaggacacggag
gtcaaagaggagaaatcagaaggagaaaaattggcggaggagaaggaaaaagacaaagag
acaacggaggcgacagacgccaaggataaggccgaggcggctgacgtgaagaaagaggag
gtcaagggtgaaaaggatgctgggaaagacgtcagagcggcgaaggaggaggcacccaag
ggtaacgggaggcctcccattgagagacctcgctttatgttcaacatcgcagacggcggc
ttcaccgagctccacactctttggcagaacgaggagcgggctgccatctcctctgggaag
atgaacgagatctggcaccgcagacacgacttctggctgctggcgggaatcgtgattcac
ggctacgcccggtggcaggacatccagaacgatccccagttcgccatcgtcaacgagcct
ttcaaatcgcaggcgaacaagggcaacttcctggagatgaagaacaagttcctggctcga
cgattcaagctgttggagcaggcgctggtgatcgaggaacagttacggcgggcggcctac
ctgaacatgacccaggacccgagccacccggccatggcgctcaacgcacgcttcgcagag
gtggagtgcctcgccgagtcgcaccaacacctcagcaaggagtcactggcgggcaacaag
ccggccaacgccgtgctgcataaagtgctgaaccagctggaggagctactgagcgacatg
aaggctgacgtgacccggctaccggccacgctgtccagagtcccgcccatcgccgcccgc
ctgcaaatgtccgagaggagcatcctcagtcgactggccagcaagggcaccgagacgcac
acacccccgcccatacctccaggaccctacgcgacccctcagaactacggcgcccccttc
acacctgcaccccccagcaccctacacatgggaggggccaactacagtcagatgccgccc
ggatccttcatatcagaagccgccgccgctgctggggccaccgggggagctgcatgggga
gccgccggagggccaaccgccgcttgccagaagaccaaggagcacgatgtggtgcagcgg
cagcgagtggtggacctctggaaggacggcaagtcagagggggccatcggacaggagctg
aggatgccaaagtccacagtgcacagcatcatcgtcaagtaccggctcagcaacacggtg
gagaacctcccgcgcaatgggcgaccaaagaaaccctga
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integrated database retrieval system
