Larimichthys crocea (large yellow croaker): 104934580
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Entry
104934580 CDS
T04659
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X3
KO
K06237
collagen type IV alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104934580 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104934580 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104934580 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lco04147
]
104934580 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104934580 (col4a5)
Exosome [BR:
lco04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104934580 (col4a5)
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104934580 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104934580
NCBI-ProteinID:
XP_019116034
LinkDB
All DBs
Position
XIV:7750345..7788351
Genome browser
AA seq
1685 aa
AA seq
DB search
MNKDLKSLRQLAVPLLFLALCVAVQQSDSAACQGCVGSKCDCSGVKGAKGERGFPGLTGQ
PGVPGFPGPEGPIGSRGEKGSDGPQGPGGPKGIRGPAGLPGFPGTPGLPGLPGQDGPPGP
RGVAGCNGTKGERGLPGNSGILGHQGLPGPPGLPGQKGDPGDVISTNRFGEKGAVGLPGL
PGVPGSPGSPGLQGPLGPPGPRGYEGRPGSPGPPGPKGNMGLNFQGPKGEKGETGLPGPP
GPPGQVGEQKRSPETEIQRGDKGDPGLPGPRGDPGYPGPPGPSGGQKGDKGEPGEAGKRG
KPGKDGDPGAAGFPGIKGESGLPGPPGRDGERGLKGDRGYPGPPGQVIGGGTGGRAGPKG
EPGYPGSPGLKGDRGPAGLSGPPGPPGIPATGGGGHSGSPGFPGERGQKGEPGVPGVSLP
GPPGRSGSPGVQGPPGPPGPPGFASTQPNCLTGEPGRPGVQGERGYPGETGQKGEKGDTC
VNCFGGTSGVPGPQGPPGQPGFPGTPGSPGAKGDRGFPGTPGSVGPPGSSGPQGSPGFPG
EKGDPGEAVTVSGVRGEKGDTGFPGPPGLPGLDGRPGRDGVPGTPGPKGTPGSLLVKGER
GIPGDPGPAGIPGDRGPPGSPGFGPPGGTGEKGAQGVSGRPGGPGAPGAKGEPGLSVAEK
GLPGPRGQDGAPGLPGQPGGPGQPGQPGFPGLPGGKGDPGLPGIGLPGPPGAKGHPGIPG
QPGSPSGPGRPGVDGLPGQPGFPGPKGEPGFGLPGPSGLPGVPGGKGHPGPKGDPGFPGG
PGSPGRSGFDGPPGSKGEPGTPGLPGARGPPGSPTSGSVGPAGPPGTPGPMGPPGEKGFP
GGNGAKGDPGPPGLDIPGLPGDRGSPGFPGSPGPAGTPGPPGGPGRDGLPGLPGQKGDMG
PMGTPGPSGGPGGPGGPGGPGHKGEPGFPGRDGSPGGPGGKGERGDPGVPGPPGPSLPPH
AIKGGKGDPGLPGVPGIPGPKGTSGLPGDPGVPGSDGRPGLPGPPGPKGDSGIPGGPGGP
GGPGAKGNMGEMGFPGPSGQKGLPGQAGRPGSPGQPGGPGFPGPKGEPGSAGVGPPGSPG
HKGEPGQPGFPGSPGLKGTPGSPGLPGGSGGPGAKGDPGLPGFQGPPGTPGPKGLDGGPG
GPGLPGSPGRPGESGRPGGPGLPGEKGQPGRDGIPGPAGVKGDPGLPGYGGPGPSGLPGL
PGTKGDPGPPGQPGSPGFPGTKGDAGFPGSPGAAGNSGPPGPPGVPLQGPKGLQGTPGPP
GRQGGPGPQGPRGPPGSGGVKGEKGIPGSIGQPGFPGQKGDPGTPGFPGSSGLPGGPGSK
GDVGLPGVPGFPGPKGDPGLPGGSGLPGDPGDVGSPGLPGDPGVPPTPIVVKGERGPPGV
HGQPGGQGQPGSPGRDGPSGLPGTPGEPGPEGPPGFSGPPGRKGDNGPAGQPGQRGYPGP
PGSDGPQGPPGLPGSVSAAHGFLITRHSQGQDVPFCPEGTNLIYDGYSLLYVQGNERAHG
QDLGSAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGESIKPY
ISRCSVCEAPAMVIAVHSQTIQIPTCPGTWDTLWIGYSFMMHTSAGSEGSGQALASPGSC
LEEFRSAPFIECHGRGTCNYYGNSYSFWLATVEPSEMFRKPQSETLKAGNLRTRVSRCVV
CMKKT
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagacttgaagagcctgcgacagctcgccgtgcctctgctcttcctcgccctg
tgcgtcgcggtgcagcagtccgactctgcggcttgccaaggatgtgtgggtagcaaatgt
gactgcagtggagtaaaaggagcaaagggtgagcggggtttcccaggtctcaccggacag
ccaggagtcccaggattccctggacctgaagggccaattggatccagaggcgagaagggt
agcgatggacctcaaggaccaggtggcccgaaaggaataagagggcctgctggattgcca
ggatttccaggaacaccaggacttccaggtctacctgggcaggatggacctccaggccca
agaggagtggcaggttgcaacgggacaaagggtgagaggggtttgccaggaaattcagga
atcctcggacaccaaggactgccgggtccacctggtctgccaggacaaaaaggagaccca
ggtgacgtgatctccaccaaccgttttggagagaaaggagcagtgggattgcctggattg
ccaggagttcctgggtctccaggatcccccggtttgcaaggtccactcggtcctccagga
cctagaggctatgagggtcgtccaggttctcccggtcctcctggaccaaagggaaacatg
ggattgaacttccaaggacctaaaggagagaagggtgaaaccggtcttccaggacctcct
ggtcctccaggacaagttggagaacagaagcgatcacccgagacggagattcagagggga
gacaagggtgacccaggacttccaggcccccgaggtgatccaggatatccaggacctcct
ggtccctcgggtggccagaaaggagacaagggcgaaccgggagaagcaggcaaaagaggc
aaaccaggcaaagatggtgaccccggtgctgcaggctttcctggaatcaaaggagaatca
ggccttccaggtcctccaggcagggatggggagagaggactcaaaggtgatcgtggatac
ccaggcccaccaggacaggtgattggcggaggcacaggaggtcgtgccggccctaaaggt
gagccgggataccctggctcacctggactcaaaggagacagaggaccagcaggtttatca
ggacctccaggtccaccaggaattccagctacaggtggtggtggtcactctggatcgcct
ggcttcccaggagagagaggtcagaagggagagcctggcgttccaggagtgtctctgccg
ggtcccccaggtcgttcgggatctcccggtgtccagggaccaccaggtcctcctggacct
ccaggctttgcctcaacacaaccaaactgtctcaccggagagcctgggcgtcctggtgtg
cagggagagagaggttacccaggagagacgggccaaaaaggtgagaagggcgacacctgt
gtgaactgctttggcggcaccagtggtgtcccaggaccccaaggacctccaggacagccc
ggattccccggaactcccggctccccaggtgccaaaggagacagaggatttccaggaaca
cctggtagcgttgggccacctggttcctctggtcctcaaggttctccaggatttcccgga
gagaagggagacccaggtgaagctgtcacagtaagcggtgtcaggggagagaagggtgac
actggattccccggaccacctggtctgcccggtctggatggtagacctggacgagatgga
gtgcctggaactcctggacccaaaggaactcctggctctttgctagtgaaaggagaacga
ggaatccctggtgatccaggtccagcaggtattccaggagacaggggccctccaggatca
cctggctttggacctccagggggcacaggagagaaaggtgctcaaggcgtctcaggaaga
cctggaggtcccggtgcacctggtgctaaaggtgaaccaggcctatcagtggctgaaaaa
ggcttaccaggacccagaggacaggacggcgcaccaggactgcctggtcaaccaggtggc
ccaggtcagcctggacagcctggtttccctggtttaccaggaggaaagggcgatcctgga
ctcccaggaattggactcccaggacccccaggagctaaaggacacccaggtatacctggc
cagccaggatcgccttcaggacccggcagaccaggagtagatggacttcctggccagcct
ggattccctggacccaagggtgagcctggctttggccttcctggcccctcaggtttacca
ggagtacccggaggtaaaggacacccaggaccaaaaggagatcccggtttccctggtggc
cctggttcacctggacgatctggatttgatgggcctccaggctctaaaggtgagcccggt
acacctggtttacctggagcccgtggcccgcctggatcccccaccagtggctcagtgggg
cctgccggcccacctggaacccctggcccaatgggaccaccaggcgagaaaggattcccc
ggaggaaatggagcaaagggagaccccggtcctccaggtctagacatcccaggtctgccc
ggagatagaggaagtcctggtttcccaggatcgccaggaccagctggaactccaggacct
cctggtggacctggacgggatggcctgcctggactgccaggtcagaaaggtgacatgggt
cccatgggaactccaggaccttctggaggaccaggagggccaggaggacctggtggtccc
ggacataagggtgaacctggattcccaggcagagatggttcacctggtggtcccggaggt
aaaggtgagagaggcgaccccggtgtcccaggacccccaggaccaagcctcccaccacat
gccataaagggtggcaaaggagatcctggactaccaggtgtaccaggtattccaggtcca
aaaggtacctctggtctccctggtgaccctggagtgccaggatcagatggacgccctgga
ctcccaggaccaccaggtcctaagggagattctggcattccaggaggcccaggtggtcct
ggaggaccaggagctaaaggcaacatgggagaaatgggattcccaggaccatcaggacag
aagggtctaccaggtcaggcaggtaggcctggatctccgggacagccaggaggacctggt
ttccctggacccaaaggtgaaccaggctctgctggagttggaccaccagggtcacccgga
cacaagggtgaaccaggccagccagggttcccaggaagtccaggacttaaaggaactcca
ggatcacctggtctccctggtggatcaggaggaccaggtgccaaaggcgaccctggcttg
ccaggattccaaggtcctcctggtactcccggtcctaagggtctcgatggtgggcccggt
ggtccaggtctccctggatctcccggtagaccaggagagtccggccgaccaggaggacca
gggttgccaggagagaagggtcagccaggtcgggatgggatcccaggaccagctggagtc
aaaggagatccaggacttcctggttatggtggtcctggtccatctggtcttccagggttg
ccaggtacaaagggagacccaggtcccccaggccaacctggcagtcctggtttccctggc
actaaaggagatgctggtttccccggctctcctggtgccgcaggcaacagcggccctcct
gggccaccaggagttcctctgcagggtcccaaaggcctccaaggaactcctggaccacct
ggaagacaaggtggacctggcccacagggaccccgtggtcccccaggaagtggtggcgtt
aagggagagaaaggtattcccggtagtattggccagccaggcttccccggacagaaggga
gatcctggtactcccggattcccaggctcctctggtcttcccggcggtcctggttcaaaa
ggagatgttggtctgcctggtgttcccggattccctggaccaaagggagacccaggactt
cccggtggcagtggactccctggagatcctggagatgtcggatcccctggccttcctggt
gaccctggtgtacctccgactcccattgtggtaaagggtgagcgcggaccccctggtgtt
cacggtcagcctggtggtcagggacaacctggttctcctggccgtgacggaccttcaggt
ctacctggtacccctggagaacctggaccagagggtcctccaggcttcagtggcccacct
ggcagaaagggagacaacggacctgctggtcagcctggtcagcgtggctaccctggtcct
cctggctcagatggtccacagggtcctcctggtcttccaggatccgtgtctgcagcccat
ggcttcctcatcacccgacacagccagggtcaggatgtgcctttctgtcccgaaggaact
aacctcatctacgacggttactccctgctgtatgtccagggcaacgagagggcccacgga
caggaccttggctcggccggcagctgcctgcgcaggttcagcaccatgcccttcatgttc
tgcaacatcaacaacgtttgcaactttgcctcccgtaacgactactcctactggttgtct
acacctgagcccatgcccatgtccatggcccccatcactggagagagcatcaagccttac
atcagcaggtgttcagtttgtgaagctccagccatggtgatcgcagtccacagtcagacc
atccagattcctacttgccctgggacttgggacactctgtggatcggatactccttcatg
atgcacaccagtgcaggttcagaaggctccggtcaggctctggcctcccctggctcctgc
ctggaggagttccgcagtgctcccttcatagagtgccacggcagagggacatgtaactac
tacggcaactcctacagcttctggctggctactgtagaacccagtgagatgttcaggaag
ccccagtcagagactctcaaggcgggtaacctacggacgcgcgttagccgttgcgtggtc
tgcatgaagaagacgtaa
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integrated database retrieval system
