Larimichthys crocea (large yellow croaker): 104934697
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Entry
104934697 CDS
T04659
Symbol
prkn
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04120
Ubiquitin mediated proteolysis
lco04137
Mitophagy - animal
lco04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104934697 (prkn)
04120 Ubiquitin mediated proteolysis
104934697 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
104934697 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104934697 (prkn)
04121 Ubiquitin system [BR:
lco04121
]
104934697 (prkn)
03029 Mitochondrial biogenesis [BR:
lco03029
]
104934697 (prkn)
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
104934697 (prkn)
Membrane trafficking [BR:
lco04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
104934697 (prkn)
Aggrephagy
Other aggrephagy associated proteins
104934697 (prkn)
Xenophagy
Other xenophagy associated proteins
104934697 (prkn)
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
104934697 (prkn)
Mitochondrial biogenesis [BR:
lco03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
104934697 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR
Motif
Other DBs
NCBI-GeneID:
104934697
NCBI-ProteinID:
XP_027131307
LinkDB
All DBs
Position
Unknown
AA seq
440 aa
AA seq
DB search
MIVFVRYNLGPGVAVELQEESSVAELKEVVGSQQGVRPENLRVLFAGRELRSTATLQVPP
VCSSCRREALRRTEEQGRLTRLDLSSSRLPSTSSGLAVILKGSGWRKGDGEEQEEVKRCA
YPHTFFVHCKSCSSVQPGKLRVRCRRCRTATLTLSRGPLCWDDVLLRGRTMVALWEMPFS
NCVCAGVLLECASHPTSDETTXVALDLIMTNRRDVPCIAFPDLRDVVVVFQCSERHVICL
DCFHRYCQTRLNERQFVHHPVIGYSLPCAAGCVDSLIKELHHFRILGDEQYGRYLQYAAE
ECLLTIGGLMCPSPGCGAGLVPPDGSRRVECDRQLGCGFVFCKDCREGYHEGACHSDQAP
PTAEAAQGFVVDEEASLRGRWDQASLLLLQESTKRCPQCSVPVERNGGCMHMLCPMCKAE
WCWICGVTWNRDCMGDHWFG
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtgttcgtgcggtataacctgggcccaggtgtggccgtggagctgcaggaggag
tcgagtgtggctgagctaaaggaggtggtggggagtcagcagggagtccgacctgagaac
ctgagggttctgttcgctgggagggagctgaggagcactgccacactgcaggttcctcct
gtctgctcctcctgcaggagagaggctctaaggaggacggaggagcagggccggctgacc
aggctggacctcagctcctcgcgcctcccctccacctcctccggactggctgtgatcctg
aaggggagtggatggaggaagggtgatggagaagaacaggaggaggtgaagaggtgtgcg
tacccgcatactttctttgttcactgtaagagctgcagctcggtgcaaccaggaaaactg
agagttcgctgcaggaggtgcaggacagcgacgctgacactcagcaggggtcctctctgt
tgggatgacgttctccttcgaggtcgtaccatggtggcattgtgggaaatgccgttttct
aactgtgtgtgtgcaggagttctactggagtgtgcgtcccatccgacctcagatgagacc
actnctgtggccctcgacctcattatgaccaaccgcagagacgtcccctgtatcgccttc
cctgatctcagggacgtggtcgtagtcttccagtgttcggagcgtcatgtgatctgtctc
gattgtttccatcgttactgtcagactcgactaaatgagcgacagtttgttcaccatcct
gtgattggctactcactgccgtgtgctgctggctgtgttgattctctcatcaaagagtta
catcatttcaggattctaggagacgaacaatatgggcggtacctgcagtacgccgcagag
gagtgtctgctgacaattggcggactgatgtgtccctcacctggctgtggggcggggctt
gtcccacctgatggcagcaggagggtggagtgtgaccgacagcttggctgtggcttcgtc
ttctgcaaagactgtagggagggataccatgagggggcgtgtcacagtgatcaggctccg
cccactgcagaagctgcacaggggttcgtggtggacgaggaggcatccctcagagggagg
tgggatcaagcctctctgctcctcctgcaggagtcaaccaaacgctgcccccagtgttca
gttcctgtggagagaaatggtggctgcatgcacatgctctgtcccatgtgcaaggcagag
tggtgctggatctgtggagtcacctggaacagagactgtatgggggaccactggtttggg
taa
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