Larimichthys crocea (large yellow croaker): 104936701
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Entry
104936701 CDS
T04659
Symbol
nfkb2
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit isoform X1
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04010
MAPK signaling pathway
lco04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
104936701 (nfkb2)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
104936701 (nfkb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lco03000
]
104936701 (nfkb2)
Transcription factors [BR:
lco03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
104936701 (nfkb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_3
Ank_4
Ank_5
Death
CIS_TMP
Motif
Other DBs
NCBI-GeneID:
104936701
NCBI-ProteinID:
XP_027139158
LinkDB
All DBs
Position
X:complement(23213461..23224984)
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AA seq
898 aa
AA seq
DB search
MAGALRMTEAQFNVYDSDLQMNLMQYDYIPPVDIKTEPYIPETAHGPYIQIIEEPKQRGF
RFRYECEGPSHGGLPGASSEKNRRTYPTVKINNYVGHARVEVQLVTHSDPPRVHAHSLVG
RHCTENGTCTLDVGPNDLTASFSNLGILHVTKKGVVEVLSRRLREERKRQKGAHCHLTDS
EENSILKEAKELGKVMDLNIVRLKFTAYLQDSNGGFTRALKPVVSNPIYDSKSPNASNLK
ISRMDKTCGTVLGGDEIFLLCDKVQKDDIEIRFYEEDDEGGWEAFGDFSPTDVHKQYAIV
FKTPPYHSAEIERPVTVFLQLKRKKAGDSSDPKQFTYIPQVQDKEEVLRKKQKPLPHYET
WRGGGGGGGRGGGAGGFGGAGAGGGGGGFQFSHQMNGGGAGGGAGGVFFTGGFTSFGGGG
GAQMSGSAPQTDGQAGSPLQQQLFQIAAALHSRASQSARQTAAALLQYCSTGDARVLLAI
QRHLCGVQDGNGDTPLHLAVIHQQTGVIQQLIHTLLSSQQQNILNTANHLRQTPLHLAVI
TRQVKVVEVLLRAGADPSLLDKDGRSPIHLAALAGDHATLRPLLAHLGEGHAHLVNTPDY
HGLHPLHLAVRRDGERCLRLLVEGGAKINAPEQKSGNTALHLAVRENLFKVACTLITELK
ADVNACTFGGNTPLHLAASLGSPTLCSMLVAAGADKNMENDEPLFFSSSSDEEQDEDEPI
RDEVRERDAAAQPINPRKRPAGGHTPLDLAKCQKVRNLLNSKQSPKSSRHCSKKMKPSSS
EEVEASGLDEDTLSRLVEVLSVGDVPWRKLAEKLGMMTLTHLYLDSPTPCQHLLQHYKLG
GGPVQGLVEALQSLGLTEGVRLLRHTELRDDKHSTDATVDSGFGSQPMEEDEPPVTNQ
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagctctcaggatgactgaagctcagttcaacgtctacgacagcgacctgcag
atgaatctgatgcagtacgactacattcctccagtggacataaagactgaaccctacata
cctgagacagctcacggtccctacattcagatcatagaagaacccaaacagaggggcttt
cgtttccgttatgagtgtgagggtccgtcccacggcgggctcccaggggcctccagcgag
aagaacaggagaacctacccgaccgtgaagattaataactacgtgggtcacgcccgggtg
gaggtccagctggtgacgcactccgaccctcctcgtgttcacgctcacagcctggtggga
cgccactgcaccgagaacggcacctgcacgctggacgtcggccccaacgacctcaccgcc
tccttcagtaacctgggcatcctccacgtgacgaagaaaggtgtggtcgaggttctgagc
cgccgcctgagagaagagaggaagagacagaaaggagctcactgccacctcacagactcg
gaggagaactccatcctgaaggaggcgaaggagctcgggaaggtgatggacctgaacatc
gtcaggttgaagttcaccgcctacctgcaggacagcaacggaggcttcacccgagcgctc
aaacccgtggtgtccaacccgatctatgacagcaaatcaccgaacgcctccaacctgaag
atctctcggatggataagacgtgcggcacggtgctgggaggagacgagatcttcctgctc
tgcgacaaagtccagaaagacgacatagagattcgtttctacgaggaggacgatgaagga
ggctgggaggcgtttggagacttctccccgaccgacgtccacaaacagtacgccatcgtg
ttcaagacgccgccctatcacagcgcagagatcgagcggcccgtcaccgtcttcctgcag
ctgaagaggaagaaagccggcgacagcagcgaccccaaacagttcacctacatcccacag
gtccaagacaaagaggaggtgctgaggaagaagcagaagccgctgcctcactatgaaacc
tggagaggaggtggaggaggaggaggaagaggtggaggagctggagggtttggaggagca
ggagctggaggaggaggaggaggattccagttcagccatcagatgaacggaggaggcgca
ggaggaggcgcaggaggagttttcttcacaggaggattcacaagctttggtggaggggga
ggagctcagatgtcaggctccgcccctcagacggacggacaggccggctcgccgctgcag
cagcagctgtttcagatcgccgccgccctgcacagtcgagcctctcagagcgccagacag
accgccgccgccctgctgcagtactgcagcaccggggacgcccgggtcctcctggccatc
cagagacacctctgcggcgtgcaagacggcaacggagacactcctttgcacctggccgtc
atccaccagcagacaggtgtgatccagcagctgatccacacgctgctcagcagccagcag
cagaacatcctgaacacagccaaccacctgcgacagacgccgctccacctggcggtgatc
actcggcaggtgaaggtggtggaggtgttgctgcgggcgggggccgaccccagcctgctg
gacaaagatggccgcagtcccatccacctggcggcgctggctggagaccacgccacactc
cgccccctgctggctcacctgggagaaggccacgcccacctggtcaacacgcctgattac
cacggtctccacccgctccacctggccgtgaggagggacggcgagcgctgcctccgcctg
ctggtggagggcggagccaaaatcaacgcacctgagcagaagagtggaaacaccgccctc
cacctggccgtcagagaaaacctgttcaaggtggcatgcacgctcatcaccgagctgaag
gccgacgtcaacgcgtgcacgtttggaggaaacacgcctctccacctggccgccagtctg
ggctcgccgacgctctgctcgatgctcgtcgctgcaggtgccgataagaacatggagaac
gacgagccgctcttcttcagctcgtcttcagacgaagagcaggacgaagacgaaccaatc
agagacgaggtcagagagcgagacgccgccgcgcagccaatcaaccctcgcaagagacct
gcaggaggccacacccctctggaccttgccaaatgccagaaggtgaggaacctgctgaac
tccaaacagagtccgaagtcgagtcgtcactgcagcaagaagatgaagccgagcagctct
gaagaggtggaggcctcggggctggacgaggacacgctgtcccggctggtggaggtgctg
agcgtcggcgacgtcccctggaggaagctggcggagaagctgggcatgatgacgctgact
cacctgtacctggacagtccgacgccgtgccaacacctgctgcagcactacaagctgggt
ggaggtccggtccaagggctggtcgaagctctgcagtctctcggcctgacagaaggagtc
cgactgctgagacacacagaactacgagacgacaagcacagcacagacgccacggttgac
agcggcttcggcagtcagccaatggaggaagacgagccgcccgtgaccaatcagtga
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