Companilactobacillus crustorum: BI355_0398
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Entry
BI355_0398 CDS
T04712
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lct
Companilactobacillus crustorum
Pathway
lct03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lct00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BI355_0398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lct03021
]
BI355_0398
03400 DNA repair and recombination proteins [BR:
lct03400
]
BI355_0398
Enzymes [BR:
lct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BI355_0398
Transcription machinery [BR:
lct03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BI355_0398
DNA repair and recombination proteins [BR:
lct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BI355_0398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
EF-hand_8
Motif
Other DBs
NCBI-ProteinID:
APU70750
LinkDB
All DBs
Position
435993..439610
Genome browser
AA seq
1205 aa
AA seq
DB search
MKNLTYHNVNYGAHRVRRSYAKIKEVLPLPNLIDIQTNSYNWFLDEGLKDMFDDIMPIDD
FAGNLSLEYVDYKLLEPKYTVDEARQHDANYSAPLHVTLKLTNHETGEIKTQDVFFGDFP
LMTDEGNFIINGAERVIVSQLVRSPGIYYNQDTDKNGRINYGTTVIPNRGAWLEYETDAK
GLGYVRIDRTRKLPISELVRALGFGEDSEILDIFGDNDTLNLTLEKDVHKDTSDSRVEEA
LKDIYERLRPGEPKTADSSRSLLYARFFDPRRYDLAPVGRYKINKKLNLKTRLLNKTLAE
TLADPDTGEVVLAKDTLIDRDAMNKLTPYLERDDFKTVTLQPSDEGVLTDPVTVQIIKVY
SETDNEKVVNMIGNGHIPETNRTITPADILAGINYFLNLKEGIGNTDDIDHLGNRRIRSV
GELLQNQFRIGLSRMERVVRERMSIQDSSTVTPQQLINIRPVVASIKEFFGSSQLSQFMD
QTNPLGELEHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLA
SYAIINKYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYVVAQANTPLNDDGSFTDDTI
LARHKDDNIETSPEKVDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLIN
PHAPLVGTGMEYIAAHDSGAALLASHAGVVEYVDAKKITIKRDEDGTTDDYKVTKFRRSN
NGKSYNQRPIVHKDEKVKKGEIIADGPAMENGELALGQNPLIAFMTWNMYNYEDAIVLSE
KLVREDAYTSIHIEEYESEARDTKLGPEEITREIPNVGEDSLKDLDEFGIIRVGAEVRDG
DILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKVFTREAGD
ELDPGVNMLVRVYIAQKRKIQVGDKMSGRHGNKGTVSIVVPEEDMPYMPDGTPVDILLNP
MGVPSRMNIGQVLDLHLGMAARKLGIHVSTPVFDGVSNDELWDIVKEADMDSDGKSILYD
GRTGEPFKNRVAVGVMYYLKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTYKSDDIVGRVKTYEAIVKGESIPKPGVPESFRVLVKELQALG
LDMKVLDSHKKEIELRDMDDDEDTVSIDALSKFAKQQEQKRAEEEAKKLEASKDSAESTS
TKSEN
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaatttgacttatcataacgttaattatggtgcacaccgtgttcgtcgtagttat
gcaaagatcaaggaagtacttcctttgccaaatttgattgacatccaaacaaattcttat
aactggttcttagatgaaggacttaaagatatgtttgatgatattatgccaatcgatgat
tttgcaggaaatctttctttggaatacgtcgattacaagttgctcgaaccaaaatatact
gttgatgaagcaagacaacatgatgctaactactcagcaccattacatgtaactttaaaa
ttgactaatcatgaaactggtgaaatcaagactcaagatgttttctttggtgacttccca
ctcatgacagatgaaggtaatttcatcatcaacggtgctgaacgtgttattgtttcccaa
ttagtacgttctcctggtatttattacaatcaagatacagataagaatggtcgtatcaat
tatggtacaactgttatccctaaccgtggtgcttggttggaatatgaaacagatgctaaa
ggtttaggttatgtaagaatcgatagaactagaaaattacctatttctgaattagttaga
gctcttggttttggcgaagattctgaaattcttgatatttttggcgataacgatactttg
aaccttactcttgaaaaagatgttcataaggatacaagtgactcacgtgttgaggaagct
ttaaaggatatctatgaaagactccgtcctggtgaaccaaagactgcagatagttctcgt
tcattgctatatgctagattctttgacccacgtagatatgatttagctcccgttggtcgt
tacaagatcaataagaagttaaaccttaagacaagacttttgaataagactttggctgaa
acattagctgatccagacactggtgaagttgtgcttgctaaagatactttaattgaccgt
gatgcaatgaacaaacttactccttatcttgaaagagatgactttaagactgttacatta
caaccttctgatgagggtgtcttaacagacccagtcactgttcaaattattaaagtatat
tcagaaactgacaatgaaaaagttgttaatatgatcggtaatggtcatattccagaaaca
aaccgtacaattacaccagctgatattttggcaggtatcaattacttcttgaacttaaaa
gaaggcattggtaacactgatgatattgatcacttgggtaatcgtcgtattcgttcagtt
ggtgaattgttacaaaaccaattccgtattggtttgtcacgtatggaacgtgttgtacgt
gaaagaatgtcaattcaagattcatctactgttacacctcaacaattgattaatatcaga
ccagttgttgcttcaattaaggaattctttggttcatcacaattgtcacaattcatggat
caaactaatccacttggagaactagaacacaagcgtcgtctatcagctcttggacctggt
ggtttgactcgtgatcgtgccggatatgaagttcgtgatgttcactatactcattatggt
cgtatgtgtcctattgaaactcccgaaggtcctaatatcggacttattaataacttggct
tcatatgccattattaacaagtatggtttcattgaaactccatatcgtcgtgtttcatgg
gatactcataaagttactgataagatcgattatttgactgctgatgaggaagataactat
gttgttgcccaagcaaatacaccattaaatgatgatggttcatttactgacgatactatc
ttggctcgtcacaaggatgacaatattgaaacaagtcctgaaaaagtcgattacatggat
gtttctcctaaacaagtagtttctgtagctactgcatgtattcctttcttggaaaatgat
gattctaaccgtgctttgatgggtgctaacatgcaacgtcaagctgttcctttgatcaat
ccacatgctccacttgttggtactggtatggaatatattgctgcccatgattctggtgct
gccttgttggctagccatgctggtgtagttgaatatgttgatgctaagaagatcactatc
aaacgtgatgaagatggtacaactgacgattacaaagtaactaagttccgtcgttcaaat
aatggtaagagttacaaccaaagacctattgtccacaaggatgaaaaggttaagaagggt
gaaattattgccgatggtcctgctatggaaaacggcgaattagctcttggtcaaaaccca
cttatcgcctttatgacatggaacatgtataactatgaagatgcgattgttctttcagag
aaattagttcgtgaagatgcatatacttcaattcatattgaagaatacgaatcagaagca
cgtgatactaaacttggacctgaggaaatcactcgtgaaattcctaatgttggtgaagat
tcattgaaggatcttgacgaattcggaattatccgtgttggtgctgaagtgcgcgatggc
gatatcttagttggtaaagttacacctaagggtgttactgaattatcagccgaagaaaga
ttgctacatgctatctttggtgaaaaagctcgtgaagttcgtgatacttcacttcgtgta
ccacatggtggtggcggaattatccaagacgttaaagtctttactcgtgaagccggagac
gaacttgatcctggtgttaacatgttagttcgtgtttacattgctcaaaagcgtaagatt
caagttggtgacaagatgtcaggtcgtcatggtaacaaaggtactgtttcaattgttgta
cctgaagaagatatgccatatatgccagatggtactccagtagacattctattgaaccca
atgggtgttccatcacgtatgaatattggacaagttcttgatcttcacttaggtatggct
gctagaaaacttggtatccatgtttcaacacctgtttttgatggtgtaagcaatgacgaa
ctttgggacattgttaaggaagctgatatggattcagatggtaagtcaattctttatgat
ggacgtactggtgaaccattcaagaatcgtgttgctgttggtgtcatgtactacttgaaa
ctagctcacatggttgatgataaacttcatgctcgttcaatcggaccatactcactagtt
actcaacaaccacttggtggtaaagcacaatttggtggtcagagatttggtgaaatggaa
gtttgggctcttgaagcttatggtgccgcatatacactacaagaaatcttgacatacaag
tctgatgatatcgttggacgtgttaagacttatgaggctatcgtcaagggtgaaagtatt
cctaaacctggtgttcctgaatcattccgtgttcttgttaaagaattacaagctctagga
ctagacatgaaggtcttagattcacataagaaagaaattgaacttagagatatggacgat
gatgaagatactgtaagtattgacgctctatctaagtttgctaaacaacaagaacaaaaa
cgtgctgaagaagaagctaaaaagctcgaagcatctaaagattcagccgaatcaactagt
acaaaatcagaaaactag
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integrated database retrieval system