Loigolactobacillus coryniformis subsp. torquens: LC20004_02765
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Entry
LC20004_02765 CDS
T05341
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lcy
Loigolactobacillus coryniformis subsp. torquens
Pathway
lcy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LC20004_02765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcy03400
]
LC20004_02765
Enzymes [BR:
lcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LC20004_02765
DNA repair and recombination proteins [BR:
lcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LC20004_02765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
RecG_dom3_C
AAA_16
DUF4618
Motif
Other DBs
NCBI-ProteinID:
ATO42907
UniProt:
A0A2D1KL84
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All DBs
Position
594716..598237
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AA seq
1173 aa
AA seq
DB search
MDLTELLLQAPKIKDWLGQVAPHSRQLVTGLQDSARSLLLSAVLRAKKQPMLVVTNSLFN
ASQLVDDLTNLLPETQVKLFPVDEVMAAQVAVSSPEYRSERVQALTFLAQQQPGIVVASL
AGIRQLLPTPEMWRASALTIKPGGELDPLQLRQQLVGMGYTREQLVGRPGEFAMRGDIID
IYPLTAANPVRIDLFDTEVDSLRYFEASTQRSIENLSEFTLLPATDFLVTPELLQQAAPT
VKKAYQTELATLKEASERTALTDHLTPVIAALEKGEVVPELVRYRDLIYAPAANLTDYLP
DDGLVILDDYPRMQESETELAADAAQWLSEELANQRMLHSQSVSTELKTLLRKNKHTHLY
LTLFQKGMGNLRLDQILDLQNRDMQQFFGQMPLLKAEIDRWQVQQQTVVVMVGDDERRER
VGRILRDFKMQATLAKPDTLQPQQVQIVAATLQNGFELPDADLVVITEKELFNQPIKKRV
RRQTLANAERIKSYNELNPGDYVVHVNHGIGKYVGMQTLEVDGAHQDYITILYQDNAKLF
IPVSQLNLVQKYVASEGKTPRVNKLGGSEWAKTKRKVSSKIEDIADDLIELYAQREAEKG
YAFSPDNEYQREFEDAFPYTETDDQLRSVAEIKHDMERPKPMDRLLVGDVGFGKTEVALR
AIFKAIQDGKQAAFLVPTTILAQQHFDTMMQRFADFPVQVELLSRFRTAKQIKASLAAIK
SGQADVVIGTHRILSKDVEFRDLGLLVVDEEQRFGVKAKERLKTLRSNVDVLTMTATPIP
RTLNMSMVGVRDLSVIETPPANRYPVQTYVMEQNAGALRSGIERELARGGQVFYLHNRVE
DIERTVANIEALVPEATVTYAHGQMTEAQLENTLYEFVHGQYDVIVTTTIIENGVNMPNV
NTLFVEDADHMGLAQLYQLRGRVGRSSRVGYAYFMYRQDKVLTEISEKRLAAIRDFTEIG
SGFKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYSQMLADAVAQKQGKAVQAKSDAELD
LGIEAYLPSEYITDQRQKIELYKRVRELSSPADLEELQADLFDRFGDYPDPVAHLLAIGL
LKVYADQALVERIRHVDQQLRVKLSAKGTRQIAPEDVFKALSKTKLKATVKMDGDKLVIT
LIIQPKMRQPDWLEELTQFLTGLAAIVQQATPA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggatttaacagaactgcttttacaagcaccgaaaattaaagattggctaggtcaggtg
gcaccgcatagtcggcagttagttactgggttacaggactcggcgcgctcattattgctc
agtgctgttttacgagctaagaagcagccaatgttagtggtaacaaatagtttatttaat
gcgagtcagttagtggacgatttaacgaatttattgccggaaacacaggttaaattattc
ccggtagatgaagtgatggcggcacaagtagcagtcagctcacctgaatatcgtagtgag
cgggtacaggcgctgacttttttggcgcaacaacagccggggatcgtagttgcttcttta
gccggaattcgccaattattaccaacaccggaaatgtggcgggctagtgctttgaccatc
aaacccggcggcgagttagatccgctgcaattacggcaacagctagttggcatgggttat
acccgcgaacagctagttggtcgtcctggtgagtttgcgatgcgcggcgatatcattgat
atctacccattgacagctgccaatcccgtgcggatcgatttatttgatacggaagtcgac
tcattacggtattttgaagcaagcacgcaacgcagtattgaaaatttatctgagtttacc
ttgttgccagcaacggattttttggtgacgccagaattactgcaacaggcggcaccgaca
gtcaaaaaagcctatcaaactgagttagccactttgaaagaagccagtgaacggactgcc
ctgacggatcatttaacgccagtgatcgcagccttggaaaaaggcgaagtagtccctgaa
ttagtgcgttatcgcgatttgatctatgcaccggccgctaatttaaccgattatctaccg
gatgatggcttagtgattttagatgattatccgcggatgcaagaaagcgaaactgaatta
gccgcggacgcagcacaatggttatccgaggaattagctaatcagcgaatgctgcacagc
caaagcgtcagtacagagttgaaaactttgttacgtaaaaataagcacactcatctttat
ttgaccttattccaaaaagggatgggtaatttacgtttagatcagatccttgacttacaa
aatcgtgacatgcaacaatttttcggccaaatgccgctcttaaaggcggaaattgatcgt
tggcaagtgcaacagcaaacggttgtggtgatggttggcgatgatgagcggcgggaacgt
gtcggtcgtattttgcgtgactttaagatgcaagccacgttggcaaaacctgatacactg
caaccgcaacaagtacagatcgttgccgcaacgctacaaaatggatttgaattacccgat
gctgatctggttgtgatcaccgaaaaagaattattcaatcaaccaattaagaagcgagtg
cggcggcaaacactagctaacgctgaacgaatcaaaagttacaatgagctgaatcctggc
gattacgtagttcacgttaatcacgggatcggtaagtacgtggggatgcagacgctagaa
gttgatggtgcgcatcaagactacattacgatcttgtaccaagataacgctaaactgttc
attccagttagccagctcaatttggttcagaaatatgttgcctcagaaggtaaaacgcca
cgggtcaataaacttggcggtagtgaatgggctaaaaccaaacgcaaagtcagttctaaa
atcgaagacattgcagatgatctgatcgaattgtacgcgcaacgggaagccgaaaaaggg
tacgcattctcaccagataatgaataccaacgcgaatttgaggacgcttttccctacacg
gaaactgatgaccagctgcggagtgtagctgagatcaagcacgatatggagaggccgaag
ccaatggatcgactgttggtcggtgatgttggttttggtaaaactgaagtggctttacgg
gcgatttttaaagcaattcaagacggcaaacaagcggcctttttagtaccgacaacaatt
ttggcgcagcagcattttgatacaatgatgcaacgcttcgctgattttccggtgcaagtc
gaattgttatcgcgtttccggacggccaagcagatcaaggcttcgttagcggcaatcaaa
agtggtcaagccgatgtagttatcgggacccaccgtattttatcgaaggacgttgaattt
cgtgatcttggcttgttggtggttgatgaagagcagcgttttggtgttaaggccaaagaa
cggctaaaaacattgcgttctaatgtcgatgtattgacgatgaccgcaacgccgattccc
cggacgttgaatatgtcaatggttggggtgcgtgatctatccgtgattgagacgccacca
gctaatcggtatccagtgcagacttatgtaatggaacaaaatgcaggggcactacgttct
ggaattgaacgtgaattggcgcgcggtggtcaagtgttctatttgcataatcgagtagag
gatatcgaacgaacagtggctaatattgaggcactagtgccggaagcaaccgtcacttat
gcccatggtcagatgactgaggcacagttggagaacacgttatatgaatttgtgcatggt
cagtatgatgtgatcgtgactacgacaatcatcgaaaacggtgttaatatgccaaatgtc
aatacattatttgtagaagacgctgaccatatgggcttggcgcagctatatcagttgcgg
ggtcgggttggtcggagcagtcgggtaggctatgcttatttcatgtaccgacaggataag
gtgctaactgaaatcagtgagaaacggctagcagcgatccgagattttactgaaataggt
tccggcttcaaaattgctatgcgtgacttgtcgattcgcggtgctggtaatttattaggt
aagcagcagcacggttttattgattcagttggctacgatctgtactcgcagatgctggcg
gatgctgtcgcccagaaacaaggcaaagccgtgcaagctaaaagtgatgctgaacttgat
ttaggtatcgaggcttatttgcctagtgagtacatcactgatcaacggcagaaaattgaa
ttgtataagcgtgtgcgcgaattatctagtccggctgacttggaagaattgcaggctgat
ctgtttgatcgcttcggggattatccggatccagttgctcatttactggcgatcggctta
ttgaaagtctatgcggatcaagcgttagttgaacgtattcgccacgtcgaccaacagttg
cgggtcaaattatcggctaaaggaacgcgccagatcgcaccagaagatgtgtttaaggcg
ttaagtaaaactaaattaaaggccactgttaaaatggatggcgataaattagtgatcacc
ttgatcattcagccgaaaatgcgccaaccggattggctggaagaactaactcagttctta
acgggtctggctgccatcgttcaacaggcgacacctgcatga
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