Loigolactobacillus coryniformis subsp. torquens: LC20004_09080
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Entry
LC20004_09080 CDS
T05341
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lcy
Loigolactobacillus coryniformis subsp. torquens
Pathway
lcy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LC20004_09080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcy03400
]
LC20004_09080
Enzymes [BR:
lcy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LC20004_09080
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LC20004_09080
DNA repair and recombination proteins [BR:
lcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LC20004_09080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
HscB_4_cys
NIL
Zn_Tnp_IS1595
Motif
Other DBs
NCBI-ProteinID:
ATO44060
UniProt:
A0A2D1KPI9
LinkDB
All DBs
Position
complement(1860637..1861485)
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AA seq
282 aa
AA seq
DB search
MPELPEVETVRQGLRGLILNKTITNVEVRWGKIINGDSAQFANDLVGLTFQEINRRGKYL
LFRLSDELTIVSHLRMEGKYRVTPQAQEVTKHTHVIFNFTDGTALRYLDTRKFGRMTLIK
TGTEDQVGGLKTLGPEPTATDFTVADFTRRLHKHKKAIKPTLLDQKVVAGLGNIYADEVL
WLSQIHPLQPANTLTGTQIQALHDNIIAELAKAIKAKGTTIRSYTDAYGATGGFQLSLHA
YGREGEPCERCGVTIEKIKVAQRGTHFCPHCQVLPESQVSAS
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagaagttgaaaccgtccgccaaggattgcgcggcttgattttaaat
aaaacgatcactaacgtggaagtccgctggggtaagatcatcaatggtgatagtgcccag
tttgccaatgatttagttggtttaacttttcaggagatcaatcgtcgcggcaaatattta
ttatttcggctcagtgacgagttaacgatcgtttcacatttgcggatggagggcaagtac
cgagtcacaccgcaagcgcaagaagtgaccaagcacactcacgttattttcaattttact
gatggcaccgcgttgcgctatttggatacgcgtaagtttggccgaatgaccttgatcaaa
acgggcaccgaagatcaggttggcggcttgaaaacgctgggccctgagccgaccgcaact
gatttcactgtggctgatttcacgcgacggttacacaagcataagaaggcgatcaaaccg
accttactagatcaaaaggtggtcgctggtttaggcaatatttacgcggatgaggtgtta
tggttaagccagatccacccattacagccagctaacacattgactggcacacagatccag
gcattgcacgacaatattattgccgaattggctaaagcaatcaaagctaaaggcacgacg
atccgtagttataccgatgcctatggcgctaccggcggttttcaattgtcattgcatgca
tacggtcgcgaaggtgagccctgtgaacgttgtggcgtgaccatcgaaaaaatcaaagtt
gcccaacgcgggacccatttttgcccgcattgtcaggtattgccggaaagccaggttagt
gcctcatga
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