Leptospirillum sp. Group II: ABH19_00735
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Entry
ABH19_00735 CDS
T04007
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
leg
Leptospirillum sp. Group II
Pathway
leg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABH19_00735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leg03019
]
ABH19_00735
03016 Transfer RNA biogenesis [BR:
leg03016
]
ABH19_00735
Enzymes [BR:
leg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ABH19_00735
Messenger RNA biogenesis [BR:
leg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABH19_00735
Transfer RNA biogenesis [BR:
leg03016
]
Prokaryotic type
tRNA degradation factors
ABH19_00735
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AKS22594
LinkDB
All DBs
Position
158090..160324
Genome browser
AA seq
744 aa
AA seq
DB search
MTKDKSDEHPLTPEERILAFLREEAQKPVRSDRLVEAVLRKKKERSDVSRALDRLVAEKQ
VILLKGGYAGLPDKLHFREGMFLSHPDGYGFVVTEGEREDLYVPPGATKGAMHQDKVLSV
HLGTDHRGRSEGQVVEIISRSRSSVVGVLHELKGGYFLSPRDPKIPHEFLVVDNGAEKLQ
EGELAVLDILRYPEPGHIPEGKISRFLGDPSDPSVDTDLVIATHHLSISFPDRVEAEAKR
MAKEVAVEPSENRVDLRHLEIMTIDGDRARDFDDALSVVENPDGTFQIGIHIADVGAYVL
PGSELDKEAFRRGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDRLARTVMVRMSPAGQVLE
SSIFRSVIRSRLRATYSRVHPILAGESTDSPESKFSVQLRSLWKLAKNLREERFQNGSLD
FDLPEPEIVLDLRGEPVDIIRSPRYLSHFLVEEFMLLANRIVAAELTRKFSMAMYRVHET
PSPEKTESLGIFLGALGISIPKRKEGKMKASDLSAVLESTRGTPLEKMVHFSVLRSLKQA
RYDVYPLGHFGLAMDDYTHFTSPIRRYPDLIVHRLLDLPEGRPSGEGSFYPLEQVAVQAS
ERERASVEAERMAVDLKKIRFMGQHIGKKFSGSVSGVTGFGFFVELSDVLVEGLVPFSAL
NDDYYVYDEKHHLLRGETTRKTYRIGDRLEVVVVRVDNERLRIEFALDQEGRPESLQKVR
KKRKGKKNRSQRAGKSRKKGSAKG
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
gtgacaaaagacaagtcagacgagcatccgttgactcccgaagagagaatcctggccttc
ttgcgggaagaagcccagaagcctgtccggagcgacaggctcgtcgaagccgttctgaga
aagaagaaggaaagaagtgacgtatccagagcgctcgaccgtcttgtggcggaaaagcag
gtcattttgctgaaggggggatatgcaggacttccggacaaacttcattttcgggaagga
atgtttttatctcaccccgacggctatggctttgtcgtgaccgaaggagagagggaggat
ctctatgttcccccgggggcaacaaaaggagccatgcaccaggacaaggtcctgtccgtt
catctggggacggatcaccggggtcgttcagagggacaggtcgttgaaatcatctcgcgg
tcgcgttcctctgtcgtgggtgtcctgcacgagctgaaaggcggatactttttgtctccc
cgcgatccaaaaattccccatgaatttcttgttgtggacaacggcgcggaaaaattgcaa
gagggagagctcgcggttctcgatattcttcgttaccccgagcccggacatattccagaa
ggaaagatttcccgatttctgggagatccgtccgatccgtccgttgacacggatcttgtg
atcgcaacgcaccacctgtccatctcctttcccgatcgcgtcgaggcagaggcaaaacgc
atggcgaaggaagtcgcggttgaaccttcagaaaaccgggtagatcttcgacatctcgaa
atcatgacgatcgacggcgacagggcacgcgattttgacgatgctctatccgtcgtggag
aatccggacgggactttccagatcggcatccatatcgcggatgtgggggcgtatgttctc
ccggggtccgaactcgacaaggaggctttccggagagggacgagtgtctatttcccggac
cgtgtggttccgatgtttccggaggttctctccaatggggttctttccctgaacccggac
gaagatcgtctggcacggacggtgatggtccggatgagtccggccggtcaggttctggaa
agctccatttttcgttcggtgatccggagccggctccgggcaacatactcccgggtccac
cccatactggcaggagagtccacggattccccggaatcaaagttttctgtccaactccgt
tctctctggaagctcgcgaagaacctccgggaggaacgatttcagaacgggagtctggat
ttcgatctgccggaaccggaaattgttctggatctgcggggtgagcctgtcgatatcatc
cgttctccacgatacctgtcccattttctggtcgaggagttcatgcttttggcgaacagg
atcgtggccgcagaactgaccagaaaattttcgatggcgatgtatcgtgtccacgaaaca
ccttctccggaaaaaaccgaatctctgggcatttttctgggagccctgggaatttccatt
cccaagcgcaaagaaggaaagatgaaggccagcgacctttccgctgtcctggaatcgacg
cggggaacaccgttggaaaaaatggtgcacttttcggttttgcgctcactgaaacaggcg
cgttacgacgtgtatcccctggggcattttggtctggcgatggacgattacacccacttt
acctcaccgattcggcgatatccggatctgattgttcaccgccttctggatcttccggag
ggacgcccttccggggaaggttccttttacccgctggaacaggtggctgtccaggcctct
gagcgggaaagggcatctgtcgaggccgaacggatggctgttgacctcaagaaaatccgg
ttcatgggacagcatatcgggaagaagttctctggttcggtttcgggggtcaccgggttc
ggattttttgttgagctttccgatgttttggtggaggggctggttcctttttcggccctc
aatgacgactattatgtctatgatgaaaaacaccaccttttaagaggggaaacaacccga
aagacctaccggatcggggacaggcttgaagttgttgttgtccgggtcgataacgagcgc
ttgcgcatcgaatttgcgctggatcaggaggggcgcccggagtctttgcagaaggtccgg
aaaaaaagaaaaggcaaaaagaatcggagccaacgggccggaaagtccagaaagaaagga
tctgctaaggggtaa
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