Lysobacter enzymogenes M497-1: LEN_3585
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Entry
LEN_3585 CDS
T04598
Symbol
alkA
Name
(GenBank) AraC family transcriptional regulator, regulatory protein of adaptative response/DNA-3-methyladenine glycosylase II
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
lem
Lysobacter enzymogenes M497-1
Pathway
lem03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LEN_3585 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lem03000
]
LEN_3585 (alkA)
03400 DNA repair and recombination proteins [BR:
lem03400
]
LEN_3585 (alkA)
Enzymes [BR:
lem01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
LEN_3585 (alkA)
Transcription factors [BR:
lem03000
]
Prokaryotic type
Helix-turn-helix
AraC family
LEN_3585 (alkA)
DNA repair and recombination proteins [BR:
lem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LEN_3585 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
BAV99072
UniProt:
A0A1J1EMZ6
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All DBs
Position
4421640..4423220
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AA seq
526 aa
AA seq
DB search
MDAPALPAPDPSLPPPQVCEQARISRDPRFDGLFFVAVTSTGIYCRPVCPAPTAKSANVK
YFGHAAACEAGGFRPCLRCRPELSPAEGAWRRGDAAVARALKLIDEGALADGPLSALAER
VGLGERQLRRLFVERLGAPPIGVHGTRRLLFAKQLLTETRLPITQVALAAGFGSLRRFNA
VFLEAYRMAPRDLRRRPNESPASEGDGDALVLRLGYRPPYDLSAMLDFLRGRALPGVEHV
DERSYSRAIGPIDAPGWLRVSAWPSDQRGRQHALKLELHGAAPARLLEITNRLRRMFDLD
ADPNAIGAALSVDPRLRELVVRRPGLRLPSGWDGFEISVRAILGQQVSVAAARTLAARVA
QRFGQALPQPFGPGLTHLFPTPVELADADLAEIGLTRARADTVRTVARALLDGRVDFRAE
RTLDDFVARWVALPGIGPWTAHYIAMRALGHPDAFPADDLVLQKALPEDGVRLSAKALNA
RAEAWRPWRAYGVIHTWRDSMPAPVALKTPARAAAAGKDKKARKAA
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggacgcccccgccctccccgctcccgatccctcgctgccgccgccgcaggtgtgcgag
caggcgcgcatcagccgcgatccgcgcttcgacggtttgttcttcgtcgccgtcaccagc
accggcatctattgccggccggtgtgtccggcgccgaccgccaaaagcgccaacgtcaaa
tacttcggccacgccgcggcctgcgaagccggcggtttccgtccgtgcctgcgctgccgc
cccgagctgtcgccggccgaaggcgcgtggcggcgcggcgacgcggcggtggcgcgcgcg
ctcaagctgatcgacgagggcgcgctcgccgacggcccgctgtcggcgctggccgaacgc
gtcggcctgggcgagcggcaactgcgccggctgttcgtcgaacgcctcggcgcgccgccg
atcggcgtgcacggcacgcgccggctgctgttcgccaagcagttgctgaccgaaacccga
ctgccgatcacccaggtcgcgcttgccgccggtttcggcagcctgcgccgtttcaacgcg
gtgttcctggaggcctaccgcatggccccgcgcgatctgcgccggcgtccgaacgagtcg
cccgcgagcgaaggcgacggcgacgcgctggtgctgcgcctgggctatcgcccgccgtac
gacctgagcgcgatgctcgatttcctgcgcggccgcgccctgcccggcgtcgaacacgtc
gacgagcgcagttacagccgcgcgatcggccctatcgacgcgccgggctggctgcgggtg
agcgcgtggccgtcggaccagcgcggccgccagcacgcgctgaaactggaactgcacggc
gccgcgccggcgcggttgctggaaatcaccaaccgcctgcgccgcatgttcgatctcgac
gccgatccaaacgccatcggcgcggcgctgtcggtggatccgcgcctgcgcgagctggtg
gtcaggcgccccggcctgcgcctgcccagcggctgggacggtttcgagatttcggtgcgc
gcgatcctcggccagcaagtcagcgttgccgccgcgcgcacgctggccgcgcgcgtggcc
cagcgtttcggccaggccttgccgcagccgttcgggccggggctgacccatctgttcccc
acgccggtcgagctggccgacgccgatctggccgaaatcggcctgacccgcgcccgcgcc
gacaccgtgcgcactgtcgcccgcgccctgctcgacggccgcgtcgacttccgcgccgag
cgcaccctcgacgacttcgtcgcgcgctgggtcgcgctgccgggcatcggcccgtggacc
gcgcactacatcgcgatgcgcgcgctcggccatcccgacgccttcccggccgacgatctg
gtcctgcaaaaagccctgcccgaagacggcgtgcgcctgagcgccaaagcgctgaacgcg
cgcgccgaagcgtggcggccgtggcgcgcctacggcgtgatccacacctggcgcgacagc
atgccggcgccggtggcgttgaaaacgccggcgcgcgccgcggccgccggcaaagacaag
aaagcgaggaaggccgcatga
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