Leucoraja erinacea (little skate): 129698921
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Entry
129698921 CDS
T09122
Symbol
usp40
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 40
KO
K11869
ubiquitin carboxyl-terminal hydrolase 40 [EC:
3.4.19.12
]
Organism
leri
Leucoraja erinacea (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
leri01002
]
129698921 (usp40)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
leri04121
]
129698921 (usp40)
Enzymes [BR:
leri01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
129698921 (usp40)
Peptidases and inhibitors [BR:
leri01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
129698921 (usp40)
Ubiquitin system [BR:
leri04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
129698921 (usp40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Crinkler
Motif
Other DBs
NCBI-GeneID:
129698921
NCBI-ProteinID:
XP_055494336
LinkDB
All DBs
Position
7:42102918..42275958
Genome browser
AA seq
1265 aa
AA seq
DB search
MFGDMFEEEEDSSFMCNNKVENGRKSRKKNTEPPARRAACNLSGIKNQGGTCYLNSLLQT
LLYTPEFRESLFALGPEELGDLSDKDKPESKVRVIPLELQRLFAQLLLADQLAASTSDLT
DSFGWTSNEETSQHDVQELNRILFSALESSLVGTSGHNLINRLYRGIVVNKILCEECDNI
SERQEDFLDLTAAVKDVSGLEEALYDLYVEEEHFDNDNLYQCGRCEKLVKAIKSAKIRHL
PTFLTISLLRFNFDFAKCERYKETGGYSFPVRLDMQPFCEHDNLPGTEYELFSVIIHKGG
CYGGHYHAYIKDIDQLGNWFSSDEEKAVISSTKNPTNDASPLELGDPLEILRAILVQLGP
DGILVDQLGQKLLEKVGVAWNKRYRKQCGSIRKFLESHPDVFLLKANGARVALKHSEHGY
SGQQLNKTKVRKTQIGNSKADSEHGDDAERTQSITPTSEVHWFDFDDSQVRPIQEKDIEK
QFQGKECAYMLFYRKSQLQRPEQARGNSRYKVPANLQEEMATLDANLQQQRAEFDSAANN
IEIHLHLGPMYKFENGALQPVSSQKDSVLTITIDRRKTVGDLMQTIFQQLDFWKGDMVIS
LAKQLPAGLHLYETFKEDHSSLHSLGITDGTILFVWDGNKVCGVDVQMGEEFEPLLLNIL
YPHLRRKSETEIVQFCETQKVFTRNTCFGSIREALALSTGISPEELTLCYRKFKNKTSSN
WVACDNEDIHTTLAQLRLKDGDSMLATDQKYNGLSVPCPNDIPLNVVPQTDRSWLQIKNY
CGEGLPQTAATVVTIPVTMEMLVSALKDNAIEKLKLKDEKENEICLRPIDRVGKLLPPVY
ENLTVKDAGFKTGSTLALFPGRTPTETQLFLYFTIGDRLHLSPEMEIVAEQSISVRECLQ
LMLEKAGLSGEHWHLRKTDWCCDAGEVLKDEEATLADMKITNGETLIIMEGRLPPKGFLT
LPIWFYQPALNSVNTEYFQANKSIDEGLCSLSILPTTRDFMPQQYTDTELDFLGNIEISG
DANLEDLKVQVLTLPLLQGFSVPSVQFLRVWLLENKSPVKILRNQQQQLGKFKFGSSVGI
GIQLLQAEEHLGSTELLLRLRMAVPGERTYYPAMEVVWDVSKEFTARALRQRISQHYSLL
PEQIEIAKQFTDLFEWMPITTWSQQVSKKKKKKKLQSLQGAPYYLKDGDVIGVKNLLIDN
NKDFSTMTDDIGKEKLKLEDNSKDKSQQSTAHQSGDATENSERQIVRGQTRRPEVALSIS
VADFR
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgtttggggacatgtttgaggaagaggaagactctagcttcatgtgcaataacaaagtg
gagaatgggagaaaatcaaggaaaaaaaataccgagccaccagcgcgtagagcagcctgt
aacctcagtggaatcaaaaaccagggaggcacctgctacctcaactcattgcttcaaaca
ctgctttatacgccggaattccgagaatcactattcgccctaggacccgaggaactggga
gatttatcagacaaagataagccagaatctaaggtgcgggtcatcccattggagctacaa
agactctttgcccaattattgcttgcagaccagttggcagcatccacatctgatctaact
gatagttttgggtggacaagtaatgaggaaaccagtcagcatgatgtgcaagaattaaat
cgaattctgttcagtgcactggaaagctctttagttggaacctctggccataacctcatt
aatagactgtaccgtggaatagttgttaacaagatattatgtgaggaatgtgacaacatt
agtgaaagacaggaggactttttggacctgactgcggctgtgaaggatgtcagtggacta
gaagaagccctgtatgacctctatgttgaagaagaacattttgataatgataatctctat
cagtgtggaaggtgtgagaaattggttaaagcaattaagtcagcaaaaatacggcacctt
cccacgttcctgaccatttcattgctacgtttcaactttgattttgccaagtgcgagcgg
tacaaggagacgggagggtactcctttcctgtcagacttgatatgcagccattctgtgag
cacgataacctgccaggcactgaatatgaacttttttctgtaatcattcacaaaggaggt
tgctatggaggccattaccatgcttatatcaaagacatcgaccaactaggcaactggttc
tcttcagatgaagagaaagcagtcatcagttcaactaaaaatccaacaaacgatgctagc
ccgttggaactgggagatcctctggaaattctgagagctattctagtccagttaggaccc
gatggcatactggttgaccagctgggacagaaattgctggagaaggttggtgtggcatgg
aacaaaagatatcgcaagcagtgtgggtccataaggaagtttctcgagagtcatcctgat
gtgtttctgttaaaagcaaatggagcgcgggttgctctaaaacactctgaacatggttac
tcagggcaacagctcaataaaaccaaagtcaggaaaacacagataggaaattccaaagct
gacagtgaacatggggatgatgcggagagaacacagtctatcacacctacttctgaagtt
cattggtttgattttgatgattcccaagtgcgtcctattcaagagaaagacattgagaag
caatttcagggcaaggaatgtgcctacatgttgttttacagaaaatctcaactgcagcga
ccagagcaggcccgaggaaattcaaggtacaaagtaccagccaatttgcaggaagagatg
gccaccctagatgccaatcttcagcagcaaagggcagaatttgattctgcagccaataac
attgaaatccacctccacttgggtcccatgtataagtttgaaaatggtgccttacagcct
gtttcttcccagaaggacagtgtgttgacaataaccatagacaggagaaaaacagttggt
gatctcatgcagactatattccagcagttggatttctggaagggcgatatggtgatcagt
cttgccaagcaattgccagcgggccttcacctttatgagacctttaaagaggatcacagc
tctctgcacagtctgggcattacagatggaacaattctttttgtatgggatggtaacaag
gtctgtggtgtggatgtacaaatgggtgaggagtttgaaccattactacttaacatactg
tatcctcacctgaggcgcaaatcagaaactgaaatcgtacagttctgcgagacacaaaag
gtgttcacccggaacacatgttttggttccattcgggaagctttagccttgtcgacagga
atttccccagaggagctaacactttgttacaggaagttcaaaaataaaacatcctcaaat
tgggttgcttgtgacaatgaagatatacacacaactcttgcacaactaagacttaaagat
ggtgattcaatgttagcaacagaccagaaatacaatggcttgagtgtcccctgtcccaat
gatatccctctaaatgtagtaccacaaacagatcgcagctggctacagattaagaattac
tgtggtgagggattgccacaaactgcagcaactgtggtgaccattcccgttactatggag
atgttggtttcagcacttaaagataatgcgattgaaaaactgaagttgaaagatgaaaaa
gaaaatgaaatctgtttgagaccaattgacagagttggaaagctcctccccccagtgtat
gaaaatttgactgtgaaggacgctgggtttaaaacaggaagcacgctagcactttttcct
ggcagaactcctacagagacacagctgttcttgtatttcactattggggaccgacttcac
ttaagccctgagatggagattgtggcagaacagagcatctcagtgcgagagtgcttgcag
ctgatgttagagaaagctggattatcaggagaacattggcacttacggaaaactgattgg
tgctgtgatgctggagaagttttgaaagacgaggaagctacattggcagacatgaagata
accaatggagagacacttattatcatggaagggcgacttccaccaaagggattcctgacg
ttacccatctggttctaccagcctgcactgaactcggtaaacacagagtactttcaagcg
aataaaagcattgatgaaggactttgttctttaagtatcttgcccactacaagagatttt
atgccacagcagtatacggacactgagttggatttcttgggcaatattgagatatctggt
gatgcgaatcttgaggatttaaaagttcaggttttgactttgcctttgctgcaaggtttc
tccgttccttcagtgcagtttctcagggtttggctgctcgagaacaaaagtcctgttaag
atcctgcgcaatcagcagcagcagcttggcaaattcaagtttgggagttctgtggggatt
gggattcagctgcttcaggcggaagaacatttaggttccacagagttgttgctacgcctg
cggatggcagtgcctggcgaaagaacctattatccagcaatggaggttgtttgggatgtg
tccaaggaattcacagctcgggccctcagacagagaatctcacagcactactcattgcta
ccagaacagattgaaattgccaaacagtttacagatctgtttgaatggatgccaataacc
acctggagccaacaagtttcaaagaagaagaaaaaaaagaaactgcagagccttcaggga
gcgccatattatctgaaagatggagatgtcattggagttaagaatctgttaattgacaac
aataaagacttcagcaccatgactgatgacattggtaaggagaaactcaaacttgaagac
aatagtaaggacaaaagtcagcaaagtactgcacatcagagtggtgatgctacagaaaat
agtgaacgacagatagttcgtggtcaaactcgcagacctgaagtggccttatccatcagt
gtagcagacttcagataa
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