Leucoraja erinacea (little skate): 129705545
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Entry
129705545 CDS
T09122
Symbol
phrf1
Name
(RefSeq) PHD and RING finger domain-containing protein 1
Organism
leri
Leucoraja erinacea (little skate)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD
zf-RING_2
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-rbx1
zf-RING_5
zf-C3HC4_4
C1_2
zf-ANAPC11
zf-RING_10
Prok-RING_1
Motif
Other DBs
NCBI-GeneID:
129705545
NCBI-ProteinID:
XP_055505092
LinkDB
All DBs
Position
18:complement(415844..483368)
Genome browser
AA seq
1999 aa
AA seq
DB search
MDEDQDEPINISVTLGKSQRKREVIAIFSDEESSSEEGDDVDEGDTDDDGEGAEDDDLED
DEDDDDEEDEDEDDEEEEAEDGDEAEGGAGGAANKKLGSGEKWASSSDEEGENCPICLNV
FRDQAIGTPENCMHYFCLDCILEWAKNANSCPVDRITFKNICVRTHFGGTVLKKLPVLNP
NKDNEEGQEDVTNCEVCGRSDREDSLLLCDGCDAGYHLDCLTPALHTVPVEEWFCPECAE
SNPTAAVEEIDDEELAFLIADAPQEPTTSRLRLTARRTRAIARTRQSERVRANVNRSRIT
RAHQIRDVPQYLMNPSLLDETIECVVAGLNTAVYHRPLAPRARTTKKRWKRSGKKRKKAR
TQKSRGKTGLWLGSKVGEKSTRKRRRKTRRRKGAKKVSKVSVTARSRIARSLGLGKPVNG
ISVPSMYRPLEPSLRIMRTDIGAASLSVYGDPNDLDPFESEADNVYGDTTSLGSPLSNKR
RILSRSALRSHRPVARPISVKISRNGRLPAVGQEAQPQAAPVPDVLEGILAKQNVLLMDS
SNIVINRDGSLKAKVASGQPALLPSGSNRTGEASTGCSASSGYNSGNSTHAPKGDWKTAG
VTNKSAAPTFPSTSRFQPNPRQPAASSNMRPAFSGTFTPMPEVSAGPRPGGSVSFPGAEW
TGAASKGAGDGQKGTSGFTPFRWLNSASNFHIKSSVGTLKRVAPQPAVRRLDISEFPRIP
KIKTQTGSDTQGNGASHLSRQMSSEQTTGARELQKAGERLQSSGSDNSRLCQEKLRALDV
APNLSTLTRLKAVHSTRLPKMEAYDPFEPTDDEVQHCGRKDSHSQLQINLKSADDMYDPF
EPTGSDPSSSSSTPDRPESRCEGESPMSSPGYGSSVAEKHTEPTSSLYYDSDSIELSPTQ
LSEPRQIPTQPQATEDTAEGPESPAPRARLSLDSDWEATCDSRLSVEVKDVKLRAESGMS
KWDNVRVSVSVCPDGAWSEQRVVNADSDGISSSASCDEGIEKAVDKIVPINTRTDVDISS
EIEVRGRVDKEARPESRIRSRSRSSSHSRRQSKNLVHGNRGGHRSKSRSKERKKLRSHSR
ERRRTRSRSRSRSSSFDRYRRRKLKQERCREKRGRRLRSGSSSSDLSTDSHKRRRKVSGS
KDHKGFYKHSHSSSERGKRRQYHREQSWEQYERRSRRSNSWSRERRPSRSSSRNRDRKKP
WPKIREKIRSWSRSSSRERRSGSRSSSRDKRSSHTRSSSREKRRSGRYRDKGRSKTHSRS
KERRKPTTHSRTRSRSRDQSRSQSRERGCQSKYQAPEDEGRWNFTQEKILHAEYDQEEKK
VPSPNQEPPQRYVSMQELIIPCSAESSQDGNDLPEDQTSAHSLGLKEESVPHIDQVQEAT
GQWELPEQWRESVCPSESVQGNDVDILTAIEHVWEDSDTHTRQDDSEITSASVPSEYFQM
GSPCYQEQATEDVVSIPLIGLSKEEEAVNKEALCPEVEPFPQPFPAEPDPPSAGDDSLNF
GKTICAGDQTASVDVSTCDQTASLDVSAGDQTASVDVSACDQTASLDVSAYDQTASLDVS
ACDQTASVDVSACDQTASLDVSAGNQTASVDVSACDQTASVDVSACDQTASVDVSACEKS
NSPVPAGSEAVCCFKSEQVDSSSTDECYQKTEPELDSVCLASNSTGKQEESPTDESATAS
SPKQLGPVNVESSKECVEIALLQQADAVNVKAELDTAAQGCNSGVKAKTLVKRVTWNLET
EKDEASSAKPARTPMSYRTHRYNKESIWKPPETSQPASPMPLFPPAAPNYMIPPPIFPGL
FPPQAFNQLNMPPPFMPPFPPLHPPPYAPVSQPAPPYIMQGGIPLIGSTPVPPLLPPPTY
QGGTAAAQVAVPVVAPPLAAETHVAQVEANLDTDNKVSEDRTQNQNYIKKLHVQERAVEE
AKLALKPYYQSKDITKEEYKEILRKAVQKICHSKSGEINPVKVANLVKGYVEKYKHIRKY
KKGAEGESSKETDSKAEES
NT seq
6000 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggatcaggatgaaccgatcaatatatccgtaacactgggaaaatctcaaagg
aaacgggaagtcattgccattttcagtgatgaagagtccagcagtgaggaaggtgatgat
gtggatgagggcgatacagatgacgatggagagggagcagaggatgatgacttggaggat
gacgaagatgatgatgatgaggaagatgaagatgaagacgacgaggaggaagaggcagaa
gatggcgatgaggctgaaggtggagctggaggagcggccaacaagaagctgggctctggg
gaaaagtgggccagcagctctgatgaagagggagagaattgcccaatctgtctgaatgtc
ttccgggatcaggccatcgggactccagagaactgcatgcattacttctgccttgactgc
atccttgagtgggcaaagaatgccaattcatgccctgtggatcgaatcactttcaaaaac
atctgtgtgcgtacacattttggagggacagttttaaagaagcttccagtactgaaccct
aacaaagacaatgaagaggggcaagaggacgtgacaaactgtgaggtgtgtggacggagt
gaccgggaagatagccttctcctctgtgatggttgtgatgcggggtatcacttggactgt
ctcactcctgcccttcacaccgtcccagtggaagaatggttttgtccagaatgtgctgag
agcaatcccacagctgctgtagaagagatcgacgatgaggagttagcgttcctaattgcg
gacgcaccccaggaacccactacgtctcggttacgtctcactgccagaagaacgcgggcc
atagcgaggactcgtcagagcgagagggtgcgagcaaatgtgaacaggagcaggattacc
cgggctcaccagatcagggatgttccccagtatctgatgaacccaagcctgctggatgaa
accattgagtgtgttgttgcgggtttaaatacagcagtgtaccatcggcccctcgccccc
cgagctcgaaccacaaagaaacgttggaaaagatcaggtaaaaaaaggaagaaggctagg
acacagaaatctcgcggtaaaaccggcctctggttgggaagtaaggttggtgaaaagtcc
acgagaaaacgcaggagaaagacgaggagaaggaagggtgcaaagaaagtgagtaaggtg
agcgtgacagcgcgctcacgcattgcacggagcctaggcctggggaaacccgtcaatggg
atctcagtcccctcgatgtacaggccattggagccatccctgaggattatgcggacggac
attggagccgcttcactctctgtctatggtgaccccaatgacctggatccctttgagagt
gaagctgacaatgtgtacggagacacaacaagtcttggctcccctctcagcaacaagaga
cgaatcctgtcccgctcagcgctacgatctcaccggccggtcgcccgacctatctctgtg
aaaatctccagaaacggacggcttccagctgtggggcaggaggcacaaccacaggccgcg
cctgttccagatgtgctggagggcatcctggccaagcagaatgtcctactgatggacagt
tccaacatcgtgatcaatcgggatggatcactgaaggctaaagttgcgtcaggccagccc
gcactgttaccgtcaggtagcaacagaacaggtgaggcgtccactgggtgttcagcgtca
agtggttataactcggggaactctacacatgccccaaagggggattggaaaactgctggt
gtcaccaacaagtcggccgcgccgacttttccatcaacgtctcgtttccaaccaaacccg
cggcagccggcagcgtccagcaacatgcgaccggccttttcaggaacttttactcccatg
ccagaggtgtcagccggccctcggcctggagggtctgtttccttccctggtgcggaatgg
acgggagcagcaagtaaaggcgcaggcgacggtcagaagggaaccagcggcttcacacct
ttccgatggctgaatagtgcctccaactttcatattaaaagcagcgtgggcacgctgaaa
cgtgttgcaccgcagccagccgtcaggagactcgacatctctgagttccctcggatacca
aagatcaagactcagactggtagcgacacacagggtaatggagcatctcatttaagcaga
cagatgagcagtgagcagactacaggagccagagagctgcagaaggctggcgaaaggctt
cagtcctcgggctcggacaactcccgcctttgccaggagaagctgcgagctctggacgtg
gcacccaacctgtccactctgacccgtctgaaggctgtccactccacaaggctacccaag
atggaagcctacgacccatttgaacctacagatgatgaagtgcagcactgtggcagaaag
gacagtcattcgcagttgcaaataaatttaaaaagtgcagatgatatgtacgatcctttt
gaaccgacgggttctgacccaagttcatcaagttccacccctgataggcctgagtcaaga
tgtgaaggtgaatcgccaatgtccagccctggctatgggagttcagtagcagagaagcac
acagagcccacatcgagtctttattatgattctgacagtatagagttatcccctacacag
ctatccgagcctcgtcaaatcccaactcaaccccaggcaacagaagacactgctgagggt
cccgagtctccagcacctcgtgctcgactttctttggactctgactgggaagctacttgt
gactcgcgcctttctgttgaggtcaaggatgtgaaattgagggcagaatcaggtatgagc
aagtgggacaatgtgcgtgtcagtgtttcagtgtgtccagatggagcatggtctgagcaa
cgggtagtaaatgcagacagtgatggtatttcttcatctgcctcttgtgatgaggggatt
gagaaagctgtcgacaagattgttcccattaatacgagaactgatgtagatatttcttca
gaaattgaagtaagaggcagagttgataaagaagctcgccctgaatcgaggatccgatcg
aggtcacgctccagttctcacagccgacggcaaagcaagaatttggttcacgggaaccgc
gggggccacaggtcgaagtcgcggtcgaaggaacggaaaaagttgagatcacattcaaga
gaacgcaggagaacaagatccagatcgcggtctcgatccagtagttttgacaggtacagg
agacggaaactgaagcaggaacggtgcagggaaaagagagggaggcgattgaggtcaggc
agctcatcctctgacctgtctactgacagccacaagaggaggaggaaggtctctgggtcc
aaggaccacaagggtttctacaaacactcccacagcagcagcgagagaggaaagagaagg
cagtaccatcgggagcaaagttgggagcagtatgaaagacggagcagacggtcaaactcg
tggtccagggagagaaggccctcgaggtccagttccagaaacagagatcggaaaaagccc
tggcctaaaatccgagagaagattaggtcttggtccaggtctagttccagagaaaggaga
tcagggtcgagatcgagctcccgcgataagagaagctcacacactcggtcgagttccagg
gagaagagaagatccggcagatacagagacaaaggaagatcaaagactcactcccgatcc
aaagaaaggaggaaaccaacaactcactcaagaacccgctcgcgatcgagggaccagagc
agatcgcagtccagagagaggggctgtcagtcaaagtaccaagccccagaggacgaaggc
agatggaactttacacaggagaaaatactacatgcagagtatgatcaagaggaaaagaaa
gttccctcccccaatcaagagccgccccagagatacgtctcgatgcaggagttaatcatt
ccttgcagtgctgagagctcccaggatggtaatgatttgcctgaggaccagacctctgct
cattcactgggactaaaagaggaatcagtgccgcacattgaccaagtacaagaagcaaca
gggcagtgggaacttcccgaacaatggcgagagtccgtgtgtccgagtgagagcgtgcag
ggaaacgatgtggatatcctcactgctattgagcatgtttgggaagactctgacacacac
acaaggcaagatgacagtgaaataacaagtgcaagtgtcccctccgagtatttccaaatg
ggcagtccttgttaccaggagcaggctacagaagatgtggtttccattccactgataggt
ctcagtaaagaagaggaggcggtaaacaaagaagccttgtgccctgaagtagaaccattc
ccccagccattcccagctgaacccgaccctcctagtgctggagatgactctttgaacttt
ggtaagacgatatgtgcaggtgatcagacagcatcggtggatgtgagcacatgtgatcag
actgcatcgctggatgtgagtgcaggtgatcagactgcatcggtggatgttagcgcatgt
gatcagactgcatcgctggatgtgagcgcatatgatcagactgcatcgctggatgtgagc
gcatgtgatcagactgcatcggtggatgtgagcgcatgtgatcagactgcatcgctggat
gtgagtgcaggtaatcagactgcatcggtggatgtaagcgcatgtgatcagactgcatcg
gtggatgtaagcgcatgtgatcagactgcatcggtggatgtgagcgcatgtgagaagtcc
aatagccctgtccctgcaggttctgaggctgtgtgctgctttaagagtgagcaggtggac
agcagctcaacagatgagtgctaccagaagacagaaccagagttggacagtgtttgcctt
gcttcaaacagtacaggcaagcaagaggaatcgccgactgatgaatctgcaactgcttca
tcaccgaagcagctggggccagtgaatgtggagagcagtaaggaatgtgtggagattgcg
ctcttgcagcaggcagatgctgtgaatgtgaaggcagagcttgatacagcagcacagggc
tgcaacagcggagtcaaagccaagacgctggtcaagagagtaacttggaacttggagaca
gagaaggatgaggcttcctcagcgaaacctgccagaactccaatgtcctacaggacgcac
cgctacaataaagagagcatttggaaacctccagaaacaagtcaaccagcgagccctatg
ccactcttcccacctgcagctcccaattacatgatccccccgccaatcttccctgggctg
tttccacctcaggcattcaaccaactcaacatgccacccccgttcatgcctccgttccca
ccgctgcatcctccaccctacgcgcccgtcagccagcccgcccctccctacatcatgcag
ggcggtatcccgctgattggttccacgcctgtgccgccgttattgccgccacccacctac
cagggtgggactgcagctgctcaggtggccgtccctgtggtcgctcctcctctggctgca
gagacacacgtggctcaagtggaagcaaacctggacactgataacaaagtctccgaggac
aggactcagaatcagaattatataaagaaacttcacgtgcaagagagagctgttgaggaa
gccaagttggcgttaaagccgtattaccagagtaaagacatcaccaaagaggagtacaaa
gaaatcctgcgtaaagcagtacagaagatctgccacagcaaaagtggtgaaattaacccg
gtcaaggtggcgaacctggtgaaaggttacgtggagaagtacaaacacatcaggaagtac
aagaagggggctgagggagagagcagcaaagaaactgacagcaaggcggaggagagctga
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integrated database retrieval system
