Leucoraja erinacea (little skate): 129705788
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Entry
129705788 CDS
T09122
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6-like isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri03015
mRNA surveillance pathway
leri03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129705788
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
129705788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129705788
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
129705788
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Gag_p15
Motif
Other DBs
NCBI-GeneID:
129705788
NCBI-ProteinID:
XP_055505565
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Position
18:complement(23562419..23611600)
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AA seq
503 aa
AA seq
DB search
MAEGADLIDIYADEEFNQETDYVANDQVDLYDDVIAAADGNNHEDQSYDEISPRTPGEPQ
KTENSARPTIVYTYGGKRQAVYVGNLTWWTTDQDVADAVHSVGVQDLLEIKFYENRANGQ
SKGFAEVYLGSESSVRRLMELLPQRELHGQRPEVMPCNKQSLNQFEAQSKKRQNPQRSQS
HDSINSPDHRDSPLPRRGPSPAENAVAPPRRDKLPLAFHMSGRSPYGDIPHGLPPPGLLP
PPMPLPLNSGYGPPLHMQPGHMPLHGTFMGRPGPPGSIVPPLPPGMPPHLVVPPPGAVPP
APHINPAFFIPPNAGLPPPVDNRGLPPPPPDAFGRPPPNQFNREEFKRGRDPDPGSPPLN
EADFEEMMNKNRAISSSAISKAVAGASTGDYGNAIETLLTAIALIRQSKVAADDRCKVLV
SSLQDCLHGIESKSYGSGSSRKRDRSRDREYSRSHDRSRRHRERSHSEDRHEDYYRERSR
ERDRHRDRDRDRERDRDREYRHR
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggccgagggagccgacttaatcgacatttacgcggacgaagagtttaatcaggagact
gactacgttgcaaatgatcaagttgacctttacgacgatgtaatagcagctgccgatggt
aataaccacgaagatcaaagctacgatgagatatcgccccggacacctggtgagccgcag
aaaacagaaaatagcgccaggccaaccatcgtttacacgtatggaggcaaaaggcaagct
gtctatgtgggaaacctaacgtggtggacaacagatcaagatgtggcagatgctgtccat
tcagttggcgtgcaggatctactggagatcaagttctatgaaaaccgtgccaatgggcaa
tcaaaggggtttgctgaagtgtatctgggatccgaaagttctgttcggcgtctcatggag
ctgcttccacaaagagaacttcacggacaaagaccagaggtcatgccttgcaacaaacag
agtctcaaccaatttgaagcacaatccaagaaaagacaaaatccgcagagaagccagtca
catgactcaataaattctcccgaccaccgcgattccccattgccccggagagggccatca
cctgctgaaaatgcagttgctccacccaggagggataagttaccacttgccttccacatg
tcagggcggtctccttatggtgatatcccacatggacttccacccccaggcctcctcccc
cctcctatgccacttcctctcaactctggatacgggccaccacttcacatgcagccgggg
cacatgccactacatggcacgttcatgggtcgacctggccctcctggatccattgtacca
ccattgccacccggtatgcctccccatctagtcgtgcctcctccaggtgccgtcccacct
gctccccacatcaacccagcattctttataccaccaaatgccggcctgcctccaccggtg
gataacagagggctccctccaccaccacctgatgcctttggaagaccaccaccaaatcag
ttcaacagagaggaattcaagcgtggcagagatcctgatcccggtagtcctcctttaaat
gaagcagatttcgaagagatgatgaacaagaaccgagcaatctctagtagcgccatctcc
aaagctgtcgccggggccagcacaggagactatgggaatgccatcgagacgttgcttact
gccatcgcattgatcagacagtcaaaggttgcagcagatgaccgctgcaaggttttagtc
agctctctgcaggactgtctccatggaattgagtccaaatcatacgggtcaggatccagc
agaaaaagagatcgatcacgagaccgagagtacagccgttcccacgacaggagccgcagg
cacagggagcgctctcacagtgaagatcgacatgaagattattatcgtgagagaagcagg
gaacgtgatcggcatagagaccgagaccgtgacagagaaagagatcgggacagggaatat
aggcaccgctaa
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