Leucoraja erinacea (little skate): 129712467
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Entry
129712467 CDS
T09122
Symbol
nfrkb
Name
(RefSeq) nuclear factor related to kappa-B-binding protein isoform X1
KO
K11671
nuclear factor related to kappa-B-binding protein
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
129712467 (nfrkb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
leri03036
]
129712467 (nfrkb)
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
129712467 (nfrkb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NFRKB_winged
Miga
Motif
Other DBs
NCBI-GeneID:
129712467
NCBI-ProteinID:
XP_055516906
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All DBs
Position
32:complement(25664101..25782316)
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AA seq
1277 aa
AA seq
DB search
MDCLDNMLTEPLDLGSAREINGAGIMEECLLRGTRVSLPEDLLEDPDIFFDVVSRRTWEG
VLSPAQRDHLRKFLPQFPENNREQQDGIVAGLFGGDDFRFGNPLHIAQKLFRDGYFNPEV
VKYRQLCTKSQYKRYLYSQQQYFHNLLKQILVSRKELLEMARKSGPQLPLKRKYHAPSSQ
EEREEERRAQSRYEKIVREVKEECEDNTISSDEEEMCSWFPHSPVHPPSPNVALRVVPTL
STQDMKTVGKLELGDEDLKLMLRKHVEKRRHQPDHPDLATGDLTLNDIIGRMNAGRRGSL
AALLDLPFPKKRTKDKEERKKKKMKVIKLEPEDLAESSGAEGPMAPPPEQQVTPKSVTTP
EPTLDTAKLTTVPGITACFFSLLQEILLSEGEASVAWIEEKVLDWQISAHSALNCWFPDA
SNWSELVQSALRFLSGEGALGVAALPSNFTPYVNCRERGQHWKWIGESGSGRESEKEITL
LCQLWFEVKDQTLPKESDELQDIAPPTPRVRTDYVVRPSTGDEKRVFQEQERQRYSQPHK
AFTFRMHGFDSVVGPVKGVFDKDPSLNKAREHSLLRSDRPAYVTILSLVRDAAARLPNGE
GTRAEICELLKDSQFLAPEVTNAQINTVVSGALDRLHYEKDPCVKYDIGRKLWIYLHRNR
SEEEFERIHQAQAAAAKAKKALQQKPKLTTKIKSSCKESTTKLPLCEQSLGTQVLADSSL
PHTPVTPVTPTLPATPTSPPAPIDGSKIVTTSAPELVKPGQSVLLMSSPSMPQLGNLVSG
SQPGLHTGPQTQAQMLSHSVTANVPQVRVVTAQHGIATAAHPPSVVQQVQQHQHQIRLPT
VTASAHTKVLPQSILTVPVKAQSGVSTVHIQQSSTKANLTMAGIGTASKTVSSTLSSAAS
SSATTILQNVAGQSIMRQVAIAGQLGMKTQSGAGIPLTATNIRIQGKDVLRLAPSSITTD
SKGQTVLRITQDMMATLTKAPVTTVKLTPDMLGTKGISATLHVTPAVQPTDSLVKTSSCT
SASATSAMVKVTPDLKVTDATSATIRLMPALAVTVADQMSKACAPLSSTDTKPTATIRIM
PGLGVIPKHGQAIAVATSSKPFTAAGAISSAAVTLTTVSTAASKAVTKVTPTAGLPISLG
TGTATVRQVPVSATMVTTTQATKLPATITVPLSVLNQPLKGKGVMAGPIIKGNLGANISG
LGRNIILTTMPAGTKLIAGSKPVSFVTAQQLQQLQHQGQATQVRIQHLHQGTSISSTKPI
STVVVTTASSVKQPPDS
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atggattgtctggataatatgctaacagaacccttggatttgggatctgccagggagatt
aatggtgctggtatcatggaggagtgtttacttcgaggaaccagggtcagtctcccagag
gatctgttggaggatcctgacatcttctttgacgtggtaagccgcaggacgtgggaaggg
gtgctctctccggcccagcgtgatcacctgaggaagtttctcccgcagttccctgagaat
aaccgggagcagcaggatggcatcgtcgcggggctcttcggtggggatgacttccgcttt
ggaaaccctctgcacattgctcagaagctgttccgagatggttactttaacccggaggtg
gtgaaatacagacagctctgtactaagtcccagtataaacgttatctctactcccagcag
caatactttcacaacctgctcaaacagatcctcgtctccagaaaggagttgcttgaaatg
gcgagaaagagtggccctcagctgcccctgaagaggaagtaccatgcgccctccagccag
gaagagagagaggaggagaggcgagcacagagccgctatgagaagatcgtgcgggaagtc
aaggaggagtgtgaagataacaccatctcatccgatgaggaagagatgtgctcgtggttc
cctcattctccggtacatcctccgagtcccaatgtagcactgagagtggtgcccaccctc
tccacacaagatatgaagacagtcggtaagcttgaattgggggatgaagatttgaaactg
atgttgaggaaacacgtggaaaagcgaaggcaccagccggaccatccagacttggctact
ggtgacctgactctgaacgacatcatcggccgcatgaatgctggtcggagaggctcgctg
gcagctttattagatcttccattcccaaagaaaaggacgaaagataaagaagagaggaag
aaaaagaaaatgaaagtgataaaactggagcccgaggatttggccgagtcgtcgggagca
gagggaccgatggcaccacctccagagcagcaggtgacacccaagtcggtcactactcct
gaaccgacccttgacacagcaaagttgacaacagttccgggaatcacagcttgtttcttc
agtctgctgcaggagatcttactgtcagagggagaggcgagtgtggcctggattgaggag
aaagtgcttgactggcagatctctgcccatagtgcgttaaactgttggttcccagatgcc
tcaaactggtcagaacttgttcagtccgctctgcgcttcctttcaggagaaggtgcactt
ggtgtcgcagctcttccgtccaacttcactccgtacgtgaactgcagagagcggggccag
cactggaagtggatcggtgagtctggttctggacgtgagtcggagaaggagattacattg
ttgtgtcagctgtggttcgaagtcaaggatcagaccttgcccaaggaatctgatgagctt
caagacatcgcacctccaacaccaagggtgcggacagactacgttgtgagacccagcact
ggagatgaaaagcgggtctttcaggaacaggagcgccagcgatacagccagccccacaaa
gccttcaccttccgcatgcacggttttgactctgttgtaggcccggtgaaaggagtgttt
gacaaggatccttcgctcaacaaggcacgggagcactctctgctgcggtctgaccggcca
gcctatgtcaccattctgtccttggtgcgagatgctgccgcccgtctgccaaacggggaa
gggactcgcgcagagatttgtgaactgctgaaggactcccagttcctggctcctgaggtc
accaatgcccagattaacacggttgtgagtggagctctggacagactgcattatgagaaa
gatccatgtgtgaagtacgacattgggcgcaagttgtggatttatctgcaccggaaccgg
agtgaggaggagtttgagcgcattcaccaggcccaggctgcagcagcgaaagccaagaaa
gctttgcaacagaaacccaagctgaccaccaagattaagtcctcgtgtaaggagagtaca
acaaagcttcctctgtgtgagcagtctctggggacccaggtattggcagactccagcttg
ccccacacacctgtgactccagtcaccccgacattgccagctacacccacctcaccgccg
gcacccatagatggcagcaaaatcgttaccaccagtgcaccagagctggtcaaacctggt
caaagtgttttgctgatgtcctcgccctcaatgccacagcttgggaaccttgtatctgga
tcacagccaggacttcacacagggccccagacccaggctcagatgctgtctcactcagtg
actgccaacgttccccaggtgcgggtagtcaccgcccagcatggcatagccacggctgca
cacccaccctctgtggtgcagcaagtgcagcagcaccagcaccagatccggctgcccacc
gtcaccgcctctgctcacactaaagtgctacctcagtctattctgaccgtgccagtgaag
gcacagtctggggtcagcactgttcacattcagcaaagttccaccaaagcaaatctaaca
atggctggaatcggcacggcttccaagacggtgtccagcacactcagcagtgctgcgtcg
agctcggccaccaccatcctccagaacgtggctggccagagcatcatgaggcaggttgcc
attgcgggccagcttggcatgaagacccagtcgggcgcaggaattccattaacggcgacc
aacatccgtatccaggggaaggacgtgctacgcctggcaccgtcctccatcaccaccgac
tccaagggccagacggtgctgcgcatcacacaggatatgatggccacgttgaccaaagcc
ccggtcaccaccgtcaaactcacccctgacatgctcgggaccaagggcatttcagccact
ctgcacgtcaccccagccgtgcagcccacggactccctggtgaagacctccagctgcacg
agtgcctccgccacctccgccatggtcaaggtcacgccagacttgaaagtgacggacgct
accagcgccaccatccgcttaatgcccgccctggctgtaaccgttgctgaccagatgagc
aaagcttgtgctcccctctcctcgacggacaccaagccgacagccaccatccgcatcatg
cccggactcggggtcattcccaaacacggacaggccattgccgtggcaacttccagcaag
cccttcacagctgcaggtgcaatatcctcagctgcagtcacactaacaacagtcagcact
gctgcatcaaaggccgtcaccaaggtgacaccaacagctggactgccaatctctttagga
acgggtacagccacagtcaggcaggttcctgtcagtgcaaccatggtgaccactacacag
gcgaccaagctgcctgctaccatcaccgtgcctttgtcagtgctgaaccaacctctcaaa
ggaaagggcgtgatggcgggaccaataatcaagggcaacctcggggcaaacatcagtgga
ctgggaaggaacatcattctcaccacgatgcctgcggggaccaagctgattgccggcagc
aaacccgtcagctttgtcacagcccagcagctgcagcagctccagcaccaagggcaggcc
acacaggtgaggatccagcaccttcaccagggaacgtccatcagctccaccaagccgatc
tccactgttgttgtgaccacagcttcctcagtgaaacagccaccagactcgtga
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