KEGG   Leucoraja erinacea (little skate): 129714178
Entry
129714178         CDS       T09122                                 
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
  KO
K12590  exosome complex component RRP46
Organism
leri  Leucoraja erinacea (little skate)
Pathway
leri03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:leri00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    129714178 (exosc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:leri03019]
    129714178 (exosc5)
Messenger RNA biogenesis [BR:leri03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     129714178 (exosc5)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C GSCFA
Other DBs
NCBI-GeneID: 129714178
NCBI-ProteinID: XP_055519661
LinkDB
Position
38:5516212..5523487
AA seq 222 aa
MAAAAVGGEMQLLRPFCCEHGLLSRPDGSACFTQGDTTVLAAVYGPAEVKVSKEIFDKAT
LDVLLKPKVGLPSVAEKSKEQMIRNTCEATVLTALHPRSSITVVLQVIHDSGSLLSCCLN
AACMALMDAGLPMKSVFCGITCMIDPDRNILLDPTTTMEKEAAAVLTFSIDSVEKQLLTL
STKGSYSVEELQQCVAICQKAAEKIFQFYRDLVSRRYSKLNE
NT seq 669 nt   +upstreamnt  +downstreamnt
atggcggcggcggcggttgggggcgagatgcagctgctgcgcccgttctgctgcgaacac
ggactcctgtcccggcccgacggctcggcctgtttcacacaaggagatacaacagttctg
gctgctgtatacggacccgccgaggtgaaagtgagcaaagagatcttcgacaaagccaca
ctggatgtcctactcaagccaaaagtcgggttaccaagtgtcgcagagaagagcaaggag
cagatgattcgaaacacctgtgaggccaccgtgctgacggccctccacccgcgatcctcc
atcaccgttgtactgcaggtcatccacgactctggatctctgctgtcctgttgcctaaac
gctgcctgcatggcgctaatggacgctgggctcccaatgaaaagtgtcttctgtgggatt
acatgcatgatcgaccctgacagaaacatcctcctagacccaacaacaacgatggagaag
gaggcagctgctgtcctcaccttctccatcgacagtgttgagaagcaactgctcacgttg
tccacaaagggttcctattctgttgaggagctccagcagtgtgttgcgatatgccagaag
gcagcggagaagatctttcagttctacagggacttggtaagcagaagatactcgaaactg
aatgaatga

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