Leucoraja erinacea (little skate): 129714178
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Entry
129714178 CDS
T09122
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129714178 (exosc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129714178 (exosc5)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129714178 (exosc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
GSCFA
Motif
Other DBs
NCBI-GeneID:
129714178
NCBI-ProteinID:
XP_055519661
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All DBs
Position
38:5516212..5523487
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AA seq
222 aa
AA seq
DB search
MAAAAVGGEMQLLRPFCCEHGLLSRPDGSACFTQGDTTVLAAVYGPAEVKVSKEIFDKAT
LDVLLKPKVGLPSVAEKSKEQMIRNTCEATVLTALHPRSSITVVLQVIHDSGSLLSCCLN
AACMALMDAGLPMKSVFCGITCMIDPDRNILLDPTTTMEKEAAAVLTFSIDSVEKQLLTL
STKGSYSVEELQQCVAICQKAAEKIFQFYRDLVSRRYSKLNE
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggttgggggcgagatgcagctgctgcgcccgttctgctgcgaacac
ggactcctgtcccggcccgacggctcggcctgtttcacacaaggagatacaacagttctg
gctgctgtatacggacccgccgaggtgaaagtgagcaaagagatcttcgacaaagccaca
ctggatgtcctactcaagccaaaagtcgggttaccaagtgtcgcagagaagagcaaggag
cagatgattcgaaacacctgtgaggccaccgtgctgacggccctccacccgcgatcctcc
atcaccgttgtactgcaggtcatccacgactctggatctctgctgtcctgttgcctaaac
gctgcctgcatggcgctaatggacgctgggctcccaatgaaaagtgtcttctgtgggatt
acatgcatgatcgaccctgacagaaacatcctcctagacccaacaacaacgatggagaag
gaggcagctgctgtcctcaccttctccatcgacagtgttgagaagcaactgctcacgttg
tccacaaagggttcctattctgttgaggagctccagcagtgtgttgcgatatgccagaag
gcagcggagaagatctttcagttctacagggacttggtaagcagaagatactcgaaactg
aatgaatga
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