Leucoraja erinacea (little skate): 129714238
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Entry
129714238 CDS
T09122
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
129714238 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leri03021
]
129714238 (supt5h)
03019 Messenger RNA biogenesis [BR:
leri03019
]
129714238 (supt5h)
Transcription machinery [BR:
leri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
129714238 (supt5h)
RNA polymerase I system
129714238 (supt5h)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
129714238 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW
Spt5-NGN
Spt5_N
DUF3912
DUF150_C
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
129714238
NCBI-ProteinID:
XP_055519755
LinkDB
All DBs
Position
38:7719461..7765525
Genome browser
AA seq
1116 aa
AA seq
DB search
MSDSDASNFTDDESSRSSEEEEQEENEEEERASRAGSEKAEVEREVEEAEEADEEEEEEE
EEEEEDEEEEEYDEEEDDRPKKKPRHGGFILDEADVDDEYEDEDQWEEGAEDILEKEEFE
ASNIDNLVLNDDHSGARRLMNHWRDKREEELGEYYMNKYAKPTAGDHFYGASDELSDDIT
QQQLLPGVKDPNLWTVKCKIGEERGTAISLMRKFVAYQLTDSPLQIKAIISPEHVKGYIY
VEAYKQTHVKQAIEGVGNLRIGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLY
KDDIAQVDYVEPSQNTISLKLIPRIDYERIKARMSLKDWFAKRKRFKRPLQRLFDAEKIR
SLGGDVTTDGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLE
VVTESTGKEREHNLQPGDNVEVCEGELINLQGKILSVEGNKITILPKHEDLKDPLEFPAH
ELRKYFKMGDHVKVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETAS
GVDAGGQHEWGELVQLDPQTMGVIVRLERETFQVLNMYGKVITVRHQAITRKKDNRFAVA
LDSEQNNIHVKDIVKVIDGPHSGREGEIRHLYRGFAFLHCKKLVENGGMFVCKTRHLVLA
GGAKPRDVTNFTVGGFAPMSPRISSPMHSSGGAPRGGGGGGGGFGGQGGMGRGRGRRDND
LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVDSKKKGGLTSA
YGRTPLYGSQTPLYGSGSRTPMYGSQTPLHDGSRTPHYGSQTPVHDGSRTPGQSGAWDPN
NPNTPSRNDEDYDFPYDDEPTPSPQAYGGTPNPQTPGYTDVPSPQVNPQYNPQTPGTPAM
YNTDQFSPYAAPSPQGSYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPS
PSPVGYSPMTPGAPSPGAYNPHTPGSNIDQGSNDWVTTDIMVKVRDTYLDAQVVGQTGVI
RSVSGGLCSVYLSSTDKVVSISSEHLEPVTPVKNDKVKVILGEDREATGMLLSIDGEDGI
VRMELDEQLKILNLRFLGILNEQGTASSGKDVYSRK
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacagtgatgcgagtaactttactgatgatgagagttcccgcagcagcgaggaa
gaagagcaagaggaaaatgaggaggaagagcgtgccagtagggctggcagtgaaaaagca
gaggtagaaagagaggtagaggaggcagaggaagctgatgaggaggaagaggaggaggag
gaagaggaggaggaggatgaagaagaggaagagtacgatgaggaggaagatgatcgaccc
aaaaagaaaccgcgacatggcgggttcatcttggacgaagctgatgtggatgatgaatat
gaagatgaagatcaatgggaggaaggagcagaagatattcttgagaaagaagaatttgaa
gcctccaacattgataaccttgtccttaacgatgaccattcaggagcgaggagattgatg
aatcattggagagacaaaagagaagaggaacttggtgaatattatatgaataaatatgcc
aagccaactgcaggtgaccacttctatggtgcttcagatgagctctctgatgatatcaca
caacagcagttactgcctggtgtaaaagatcccaatttatggactgtgaaatgtaagatt
ggtgaggaaaggggaactgccatttctttgatgaggaagtttgtcgcctatcagttgaca
gattcacccctccagatcaaggctattatttctcctgagcatgtgaaagggtatatttat
gtggaggcatacaagcagactcacgtgaagcaggccattgagggtgtggggaacctgagg
atagggttctggaatcagcagatggtccccatcaaggaaatgactgacgtgctgaaggtg
gtgaaggaagttaccaacttgaaacccaagtcttgggttcgtctaaagagaggtctctac
aaggatgacattgcacaggtggactatgtcgagccaagccaaaacacaatttcactgaaa
ctgatcccaagaattgattatgaacggatcaaggctcggatgagtttgaaagactggttt
gccaaaaggaaaaggtttaagaggccacttcaaagactctttgatgcagaaaaaatcaga
tcgctgggtggtgatgttaccactgacggagacttcctcatatttgagggcaatcgctac
agccgaaaaggatttttgttcaaaagcttcgcaatgtctgcagttattacagaaggagtt
aagcccacactttctgaattggaaaaatttgaggaccagccagagggcattgatctggaa
gtggttactgaatcaacaggtaaagaaagagaacacaacttgcaacctggagataatgtg
gaagtttgcgagggtgaactgataaacctacaagggaaaatcttgagtgtggaaggcaat
aagatcacaattcttcccaaacacgaggatctgaaggatcctttagagtttccagcccat
gaattgcgtaaatatttcaaaatgggagaccatgtgaaggtgatcgcaggacggtacgag
ggagatacaggactgattgtacgcgtggaggagaactttgtcattctattctcagacctg
acaatgcacgagctgaaagtgctcccgagggatttgcagctgtgttcggaaacggcgtct
ggtgtggatgcagggggtcagcatgagtggggtgaattggtgcagctcgatccacagact
atgggcgtcattgtccggttggagagagagacatttcaggttcttaatatgtatgggaag
gttattactgtacgacaccaggcaataacccggaaaaaggacaatcggtttgctgtggct
ctggactctgagcaaaataatattcatgtgaaagacatcgtcaaagtcattgatggaccg
cactctggccgtgagggtgaaattagacacttgtatcgtgggtttgcctttctacattgt
aagaagttggtggaaaacggtggcatgtttgtttgcaaaactcgccacttggtgcttgct
ggtggtgcaaagccaagggacgttacaaatttcacagtgggtggttttgctccgatgagc
ccccgaatcagcagtccaatgcactccagtggcggagctcctcgaggtggtggtggtggc
ggtggtgggtttggagggcaagggggaatgggccgtggtcgaggacgcagagataatgat
ttgatcggacagacagttcgtatctcgcaaggaccatataaaggttatattggtgtcgta
aaggatgcaacagaatctacagctcgagttgagcttcattccacctgccagaccatttct
gtcgatcgccagcgtctcactacagtagactcaaagaagaagggtggcttgacgtctgct
tatggccgtactcctctgtatgggtcccaaacgccactatatggctccggatcacggaca
ccgatgtacggctcccaaacacccttgcacgatgggagtcgaacccctcattatggttcc
cagacaccagttcacgatggcagcagaacaccaggacagagcggtgcttgggatcccaac
aatcccaacacgccctccaggaacgatgaagattacgatttcccttatgatgatgaaccc
acgccatctccgcaggcatacggtggcacacccaacccacagactccaggctatacagat
gttccatcaccacaggttaatcctcagtacaaccctcaaactcctggaacaccagcaatg
tataacaccgaccaattctccccctatgcagctccatcccctcaaggatcttatcagccc
agccccagtccgcagagctatcaccaggttgcaccgagtcctgtgggctatcagaatact
cactcaccagccagctatcacccaacaccttcgcccatggcataccaggcaagtccaagt
ccaagccctgtcgggtacagtccaatgacacctggagccccatctcctggtgcatacaat
cctcatacaccaggttccaatattgatcagggctcgaacgactgggtaacaacagatatc
atggtgaaagtccgtgacacgtacctggacgcacaggttgtagggcagacgggagtcatc
cgcagtgtgtcgggtgggctgtgctctgtgtatttatcgtccactgacaaggttgtcagc
atctcgagcgagcaccttgaaccagtcacccctgtgaaaaatgataaggtgaaggtgatt
ctgggtgaagatcgggaggctacaggcatgctattgagtatcgatggtgaggatgggatt
gtccgcatggagctggatgaacagctgaagatcctcaacctgagatttcttgggatcctg
aatgaacaaggaacagcatcatctggaaaagatgtatatagtcggaagtaa
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integrated database retrieval system
