Leucoraja erinacea (little skate): 129715055
Help
Entry
129715055 CDS
T09122
Symbol
shrprbck1r
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1
KO
K10630
RanBP-type and C3HC4-type zinc finger-containing protein 1 [EC:
2.3.2.31
]
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri04217
Necroptosis
leri04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
129715055 (shrprbck1r)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
129715055 (shrprbck1r)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
leri04121
]
129715055 (shrprbck1r)
Enzymes [BR:
leri01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
129715055 (shrprbck1r)
Ubiquitin system [BR:
leri04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
129715055 (shrprbck1r)
Multi subunit Ring-finger type E3
LUBAC complex
129715055 (shrprbck1r)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sharpin_PH
zf-RING_2
ubiquitin
zf-RING_UBOX
zf-C3HC4
zf-RING_5
IBR
zf-RanBP
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
129715055
NCBI-ProteinID:
XP_055520873
LinkDB
All DBs
Position
2:complement(122767431..122801598)
Genome browser
AA seq
710 aa
AA seq
DB search
MASGEARGLRAGPAAERPGLGLGTVLMSCQVWEGGGRRSALRLQLSMERPGDFRLGWRRG
GGSNSLGLYELNLKDVVYEFKSATCHGISMRNQPANQLVCHFDDEEEAQRWSTIITSSLR
EVEKASSMVGAQSQSPPPPAVGKGSCESGVDTHRASPDIPKPGTDLAHTEDLVLQLTQAI
EAGDCTLTAECAVTLAQQRACLAISLKELSYPSQPISLRVGVEDASSSATIVLKVFPYAT
IYTLKQQVFREFGFHPGVQRWIVGQCLAADHRTLSSYGVRRDRDPAFLYLLSSKLAGLSR
QQYEEDQAQAIMADGEPLTHVLRRASLLLHEKWNCSTLPASKGGALATSREGRPDLSNAA
LCLDLESTSHQPAVSQETRSQLQQQTSPTHQAAQKGWACVQCTYINKPNRPGCEMCSSPR
PQDYPVPEEYALNDEELCRMLQEKEELLRTQQEQEEERLRNYQQLLQTDGQHLVPNLQPA
DCPVCLNTLGPQEGVVLRDCLHTYCRECLKQLIRMSVEPEVACPYRDSSYACESKLQERE
IRALVSAEDYNKFLDRSVSVAESSSDNSYHCRTPDCRGWCIYEDAVNEFHCPSCRKLNCL
LCKAIHTGMNCKQYQDDVQSRAANDSNAHCTSEMLKSLVQTGEAMHCPRCGIVVQKKGGC
DWIRCPVCHTEICWVTKGCRWGPGGPGDTSGGCRCLVNGQRCHALCQNCH
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgggcgaggcgcgggggttgcgggccgggccggcggccgagcgcccggggctg
gggctgggtaccgtgctgatgtcgtgccaggtgtgggagggaggcggccgccgctcggcc
ctgcggctgcagctcagcatggagcggcccggggacttccggctgggctggcgacgcggc
ggcggcagcaacagcctgggcttgtatgaacttaacttaaaggacgttgtgtatgaattc
aagagcgcgacgtgccatgggatcagcatgcgaaaccagccggccaaccagctggtctgt
cacttcgatgacgaggaggaggcccagagatggtcgaccatcatcaccagctcgctgaga
gaggtggagaaggcgagtagcatggtcggtgcacagagccagagccctccgccgccggca
gtgggcaaggggagttgcgagagcggagtagacactcacagagccagtccggacatccca
aagccaggcaccgatctggcacacacagaggacctggttctgcagctgacacaggcaata
gaagcaggtgattgcaccttgacagcggagtgtgcggtgactcttgcccagcagagagcc
tgcctggccatctctctgaaagagctttcctaccccagccagcctatcagcctgagagtc
ggagtggaggacgcctcctcttctgccaccatcgtcctgaaggtcttcccctacgccaca
atctacacactaaagcaacaggtgttccgtgagtttggattccaccccggggtccagcgc
tggatcgtcggccagtgcttggcagccgaccacaggacgctcagctcgtacggggtgagg
agggaccgagaccctgccttcctctacctgctctccagcaagctggccggactgtcccgg
caacagtacgaagaggaccaggcccaagccatcatggccgacggggagcccctcacacat
gtcctccgcagagcgagcctcctgctgcacgagaagtggaactgcagcaccttacctgcc
agcaaaggtggggcgcttgccacgagcagggaaggaaggccggacctcagtaacgctgcc
ctgtgcctcgacctggagtccacgtcgcatcagccggcggtgtcacaggagacgaggagt
cagcttcagcagcaaacctctcccacgcaccaggctgcacagaaaggctgggcctgtgtg
cagtgcacctacataaacaaacccaaccggcctggctgtgagatgtgcagcagccctcgc
ccacaggactatcccgtacccgaagaatatgcgctcaacgacgaggagctgtgtcgcatg
ctgcaggagaaagaggagctgctgagaacgcaacaggagcaggaggaagagcggctgagg
aactaccagcagctgctgcagacggacggacagcacctggtgcccaatctccagccggca
gactgccccgtctgtctgaacaccctgggaccccaggagggagtggtgctccgcgactgt
ctacacacctactgcagggagtgcctgaagcagctgatccggatgtcggtcgagccggag
gtggcctgcccgtaccgggacagcagctacgcctgcgagagcaagctgcaggagcgcgag
atcagagcgctggtgtccgcagaagactacaataagttcctggaccgcagcgtgtctgtg
gcagagagcagcagtgacaacagctaccactgccgcacaccggactgcaggggctggtgc
atctacgaggatgcagtcaacgagttccactgcccgtcctgccgcaaactcaactgcctg
ctctgcaaggcgatccacacgggaatgaactgcaagcaatatcaggacgatgtgcagagc
cgggcagctaacgacagcaacgcgcactgcaccagcgagatgctgaagagcctggtgcag
acgggtgaagccatgcactgtccacgctgcggcatcgtggtgcagaagaagggcggctgt
gactggatccgctgccccgtctgtcacaccgagatctgctgggtcaccaagggctgtcgc
tggggacctggcggtccgggtgataccagtgggggctgccgttgcctggtgaatggccag
cggtgccacgctctctgccagaactgccactga
DBGET
integrated database retrieval system
