Leptolyngbya sp. O-77: O77CONTIG1_03711
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Entry
O77CONTIG1_03711 CDS
T04251
Symbol
rnjA
Name
(GenBank) Ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
let
Leptolyngbya sp. O-77
Pathway
let03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
let00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O77CONTIG1_03711 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
let03019
]
O77CONTIG1_03711 (rnjA)
Messenger RNA biogenesis [BR:
let03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O77CONTIG1_03711 (rnjA)
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GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
BAU43879
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Position
complement(4137491..4139254)
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AA seq
587 aa
AA seq
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MSQNDQNSALKIIPLGGLHEIGKNTCVFEYADEIVLLDAGLAFPTDGMHGVNIVLPDTTY
LRENRQKIKGMIVTHGHEDHIGGIPFHLKQFDIPVMYGPRLAMALLEDKLEEAGVADRTE
LRTVRPREMVRIGKYFLVEYIRNTHSIADSFSVAIHTPLGVVIHTGDFKFDHTPVDGEYF
DIQRLAEHGEKGVLCLISDSTNSEVPGHTPSERSVFPNLDRHFSQAKGRLIVTTFASSVH
RVNMILELAKKHGRVVSVLGRSMLNVIAHARKLGYIQCEDDLFVPLNMANKMPDENVLIL
STGSQGEPMAAMTRIANREHKQIQIRKGDTVIFSANPIPGNTIAVVNTIDKLMMQGANVI
YGRDKGIHVSGHGAQEDQKLMLALTRPKFFLPVHGEHRMLVKHAETAQSMGIPAENMVII
DNGDVVELTQDSIRVAGKVPSGIELVDSSRSGVVHQRVLKERQQLAEDGVVTIAATIGWN
GELVSVPAIHLRGVVTSVEKSRLERSVVQTLETVLSDRWKEVTHNFGDGEIDVDWTKLQA
TLEAELRRQLRREFQRSPLLVFLMQTPIKPVSVSNGTRRLEAEKVAS
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaaacgaccaaaactccgccctcaaaattattcctttgggagggcttcatgaa
attggtaaaaacacctgtgtgtttgagtatgccgatgaaattgtgctgctagatgcgggt
ctagcgtttcccacagacgggatgcacggcgtaaatatcgtgctacctgacaccacgtac
ctgcgcgaaaatcgccagaaaatcaagggcatgattgtcacgcatggacacgaagatcac
atcggcggcattccctttcatctcaagcagtttgacattccggtaatgtacgggccacgt
ctggcaatggcgctgctagaagacaagctggaagaagcaggggttgccgatcgcacggaa
ctacgcaccgttcgcccccgtgaaatggtgcggattggcaaatatttcctggtagagtat
atccgcaatacccactccattgcggatagtttcagcgtggcaatccacacccccttgggc
gttgtgattcataccggagacttcaaatttgatcatacgcctgtggatggcgaatacttc
gatattcagcgtcttgcagagcatggcgagaagggtgtcctgtgcctaattagcgactcg
accaactcagaggtacccggacacacgccatctgagcgctccgtttttcccaatctcgat
cgccactttagtcaggcaaagggacggctgattgtcaccacctttgcttcgtcggtgcat
cgggttaacatgattttggaactggcgaaaaaacatgggcgcgtcgtgtcggtgttgggg
cgttcgatgctcaacgtcattgcccacgcccgaaaactgggctacatccagtgcgaggac
gatttgtttgtgccgctcaatatggccaacaaaatgcccgatgagaacgtgctgattttg
agtacggggtcccagggtgaaccgatggctgcgatgacccggattgctaatcgggagcac
aagcagatccagatccgaaaaggggatacggtgatcttttcggcgaacccgattcctggc
aacaccatcgctgtcgtcaacacgatcgacaagctgatgatgcagggggcaaacgtgatt
tatggccgtgacaagggcatccacgtttcgggacacggcgcacaggaagaccagaagctc
atgctggcgctgacccgaccgaaattcttcctgcccgttcatggcgaacatcgaatgctc
gtcaagcacgcggaaaccgcccagagcatgggcattcccgccgagaatatggtgattatt
gacaatggggacgtggtggaactgacccaggacagcattcgagtagcgggtaaagtgccg
tcgggaattgaactggtggattcttcacgctctggtgtggtgcatcagcgcgtgctgaag
gagcggcagcagcttgcggaagatggcgtggtgaccatcgccgcgacgattggctggaat
ggcgagctggtgtctgtgcctgcaatccacttgcggggggtagtgacctccgtcgagaaa
tctcgactggagcgctctgtggtgcaaaccttagaaaccgtgctgagcgatcgctggaaa
gaagtaacgcacaactttggcgatggcgaaattgacgtggactggacgaagctacaggcg
acgctggaagccgaactgcgccgacagttgcgccgcgagtttcaacggagtccgctactg
gtgtttttgatgcaaacgccaattaagcccgtttctgtgtccaacggcactcgccggcta
gaggcagaaaaggtggcttcttag
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