Laceyella sacchari: C1X05_08335
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Entry
C1X05_08335 CDS
T05304
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lfb
Laceyella sacchari
Pathway
lfb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lfb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C1X05_08335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfb03400
]
C1X05_08335
Enzymes [BR:
lfb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C1X05_08335
DNA repair and recombination proteins [BR:
lfb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C1X05_08335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
PylD_N
Motif
Other DBs
NCBI-ProteinID:
AUS08851
LinkDB
All DBs
Position
1647665..1648618
Genome browser
AA seq
317 aa
AA seq
DB search
MELKPIIPFEPVVTDAPPSGERWIAQVKWDGVRVLTYVENGQVKLFNRKKNERTHHYPEL
AKVSDYCTASSVILDGEVIAWREGKPSFYEVMKRDGLRQMNKVPQAMKRVPITYMVFDLL
YLDGEWMTERPLAERQAQLNQIIQPVDHVRLVPNFTDVDGLYEAVRQQGLEGIVVKDLTS
AYVIGGKDGRWRKRKVTHDLIAVVGGVTFRGKMVNSLLLGLYDDWDRLHYIGHAGTGKLT
QADWRDITECVTPLVQTEMPFYNRPERIGDAIWVTPLLTVKVHYLEWVNGHSLRQPSIQG
VVDADPLSCRGFPLSGR
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
gtggaattgaaaccaatcatcccttttgaacccgtcgtgacagatgcgccaccttcagga
gagcgctggattgctcaagtcaaatgggacggggtgcgggtgttgacgtatgttgaaaac
ggtcaggtgaaattgttcaatcggaaaaagaatgagcgaacccatcactatcctgaattg
gcgaaggtcagcgactattgcacggcttcgtctgtcattttggatggggaggtcatcgct
tggcgggaagggaagccctcgttttacgaggtgatgaaacgggatggcttacgccaaatg
aacaaagtgccgcaagcgatgaagcgggtgccgatcacctacatggtttttgatttgctt
tatctggatggcgaatggatgaccgagcgtccattggcagaacgacaagcgcagttaaac
caaatcatccagccggtggaccatgtgcggttggtgcccaacttcaccgatgttgatggc
ctgtatgaggctgtgcgccagcaagggttggaaggcattgtcgtgaaagatttgaccagt
gcttatgttattggtggaaaagatgggcgctggcgcaaacgaaaagtgacacatgacctg
atcgccgtagtaggaggggtgacgttcagagggaagatggtcaactcgcttttactgggg
ttgtacgatgattgggatcgtcttcactacatcggacatgccggcacggggaaattgact
caggcggattggcgagatatcactgaatgtgtcaccccgttggttcaaactgagatgcct
ttttacaatcggccggagcgaatcggcgacgcgatttgggtcaccccattgctcacggtt
aaagtccattatctggaatgggtgaatgggcattctttgcgacagccgagcattcagggg
gtcgtcgatgctgatccgctttcatgccgcggttttccgttatctggtaggtga
DBGET
integrated database retrieval system
