Limosilactobacillus fermentum F-6: LBFF_1827
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Entry
LBFF_1827 CDS
T02669
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lff
Limosilactobacillus fermentum F-6
Pathway
lff03420
Nucleotide excision repair
lff03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LBFF_1827
03430 Mismatch repair
LBFF_1827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lff03400
]
LBFF_1827
Enzymes [BR:
lff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBFF_1827
DNA repair and recombination proteins [BR:
lff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LBFF_1827
MMR (mismatch excision repair)
Other MMR factors
LBFF_1827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
UvrD_C_2
UvrD-helicase
UvrD_C
Viral_helicase1
SLFN-g3_helicase
DEAD
AAA_16
Catalase_C
DUF4351
Clenterotox
NACHT
ZnuA
Motif
Other DBs
NCBI-ProteinID:
AGL89717
UniProt:
A0A806IJ50
LinkDB
All DBs
Position
complement(1839996..1842290)
Genome browser
AA seq
764 aa
AA seq
DB search
MTDATQAREQAHLDQVIDRIKAAEQEASQKIQSAKKDIDTISGDFNEIRMNTTTYSGMMD
TAMSVRAQQQLLDERENSWQHAADRLETFRRLEAKPYFARIDFTEEAGQTPETIYIGLAS
FADSPDHFLVYDWRAPISSIYYEGELGEVSYDTPDGQQTVNVELKRQFQIEDGVIVTLYD
TAETVTDQMLLAALNNHSSTKMKSIVTTIQRTQNRIIRNTDADLLFVQGAAGSGKTAAVL
QRVAWLLYRYRGNLNSSQVILFSPNQLFNDYIDQVLPELGEHNMVQLTYYQYVNRRVPRL
QVASIQERFDADQEGVNARASQLLTSLTYFNAVTRYAKRLGRDGHLRFKNLMFNKKAFFS
KDKIAELYYSFNQNYNLGNRLDATKQELVKMLNRRISGEMRSKWVEERIQTLSKEELDVI
YHEYGGEFKDEEAENKYLARRIVMEAFKPIKKAIDHNRWMNINAQYIHLLRVTPKLVKLA
DFGLTEDEWAGYVDDQLAALKEKRMSANGISVYLYLYDLLTGKRGQREIRFVFVDEVQDY
DAFQLAYLKFCFPKARFTLLGDLNQAIFTHNNARSLLQQLGTMFEPEKTKVIQLTRSYRS
TKQITNFTKAILKDGEAIEAFEREGELPRVLTAPSEEDAVNQVVATLAKYQADHDTTAII
TKTLTDAEKITALLKEAGQAVTLIQTENQRLAQGTIVVPSYLAKGLEFDAVIVWDANQAK
YQGDAERQLVYTICSRAMHALTVTSVGPVTDLIGQIPGELYQTK
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
ttgactgacgcaacccaagcacgtgaacaggcccacttggaccaggtgattgaccggatt
aaggccgccgaacaagaggcaagccaaaagatccagtccgctaaaaaagacatcgatacg
attagcggggacttcaacgagatccgcatgaacaccaccacctactcggggatgatggac
acggcgatgtcggtgcgcgcccaacagcagctcctcgatgagcgggaaaactcctggcaa
cacgccgccgaccgcctagaaaccttccggcgcctcgaggccaagccctactttgcccgg
attgatttcaccgaagaagctggccagaccccggaaacgatttacatcggcctggcctcc
tttgccgactcgccggaccactttttggtgtacgactggcgggcgccgatctcgtcaatt
tattacgagggcgaactgggcgaggtttcctacgacacccccgatggccaacagaccgtt
aacgtggagttaaagcgccagttccaaattgaagacggcgtaatcgtgaccctctacgat
acggccgaaacggtgaccgaccaaatgctcttggcggccttaaacaaccactcgtcgacc
aagatgaagagcatcgtcaccaccatccagcggacccaaaaccggatcattcgtaacacc
gacgccgacctgttattcgtgcagggggcggctgggagcgggaagacggcggccgtcttg
cagcgggtggcttggctcttgtaccgctaccggggcaacctcaattcctcgcaggttatc
ttgtttagccccaaccagctctttaacgactacatcgaccaggtgctcccggaactgggg
gaacacaacatggtgcagctaacctactaccagtacgttaaccgtcgggtgccgcgctta
caagtcgcctcaatccaggaacgcttcgacgccgaccaggagggggtcaacgcccgggcc
agccaactgttaaccagcctgacctactttaacgccgttactcgctacgccaagcggtta
ggccgcgatggccacctgcgctttaagaacctgatgtttaacaagaaggccttctttagc
aaggacaagatcgccgagctctactactcctttaaccaaaactacaacctggggaaccgg
ctggacgctaccaagcaggagctggttaagatgctcaaccggcgcatttctggtgagatg
cgctccaagtgggtcgaagaacggatccagaccctaagcaaggaagagctcgacgtcatt
taccacgagtacggtggcgagtttaaggacgaagaggccgaaaacaaatacctggcccgc
cggatcgtaatggaggccttcaagccgattaaaaaggcgatcgaccataaccgctggatg
aacatcaacgcccaatacatccacctgctccgggtgactccgaagctagtgaagttagcc
gactttggcctgaccgaagacgaatgggcgggctacgttgacgaccagttagcggccctc
aaggaaaagcggatgagcgccaacggaatcagcgtctacctgtacttatacgatctcttg
accggtaagcggggccaacgcgagatccgcttcgtctttgtcgacgaggtccaagattac
gacgccttccagctggcctacctcaagttctgcttccccaaggcccgcttcaccctgcta
ggtgacttaaaccaagccattttcacccacaacaacgcccggagcctcttgcaacagttg
ggcacgatgtttgaaccggaaaagaccaaggtcattcagctgacccgttcctaccggtcg
accaagcagatcaccaactttactaaggcgatcctaaaggacggggaagctattgaggcc
tttgaacgggaaggggaactgccgcgggtgctgacggcgccaagtgaagaggacgccgtt
aaccaagttgtggcaaccttagcgaagtaccaagccgatcacgacaccaccgccattatc
accaagacgctgaccgacgccgaaaagatcaccgcccttctaaaggaggccgggcaagcg
gtcaccctgattcagaccgaaaatcaacggctggcccaggggacgatcgtggtaccgtct
tacttagctaagggactggagtttgacgccgtgatcgtttgggatgccaaccaggctaag
taccaaggcgacgcggaacgccagttggtctacacgatttgttcacgggcgatgcacgcc
ctgaccgtgaccagtgtgggcccggttacggacctgattggccagattccgggggaattg
taccaaacaaagtga
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