Lysinibacillus fusiformis: HR49_10880
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Entry
HR49_10880 CDS
T03655
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lfu
Lysinibacillus fusiformis
Pathway
lfu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HR49_10880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfu03400
]
HR49_10880
Enzymes [BR:
lfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HR49_10880
DNA repair and recombination proteins [BR:
lfu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HR49_10880
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AJK87633
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Position
2189456..2191273
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AA seq
605 aa
AA seq
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MKPMLLTEANEIPLGDDWLYETKYDGFRCLLLWDEQPMLISRNGRNLNHSFPEIIEYCHQ
IYASIKAFLPLTFDGELVYLSNSYKSEFSVVQQRGRMQNQDVIAKHAQAFPMRLLVFDVL
TLKGEAFSNRYLKTRKEQLAKLAAKVKLPNVDYEDRRAIQMVQASEESKILWQAIKVYNG
EGMVAKKRTSKWLDNTRSSHWLKIKNWRYVTVIVTQYDHSNGYFQGSIYDEGHLREVVTF
KHGMKEEEHQTLVAFFQAQGQRMKELWELEPSICVDIACIDFDGSKLREPKFHAFRLELS
PDSCQWQHMQRQLFPIPETVPITHPDKPVWPEIGVTKDHYLSYLQSVSPYLLPFLLDRPL
TVIRYPHGVPGESFYQKSRPDKLPNFVATAMMDEIDYIVCNNLETLLWLGNQLALELHIP
FQTRQTMYPTEIVFDLDPPTTDHFSFAIAGALDLKKIIDYFQLQSFVKTSGGKGLQLYIP
LPANKFTYEEVRVFTEFVCRFLCQQKPHLYTIERLKKNRHNKLYLDYVQHAEGKTIIAPY
STRGNELGLVATPLHWEEVNDDLKPSYFTIPAVMERMKKITNPFKYFREVGEQQDFQAVL
ERMKE
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatgcttttaacggaagcaaatgaaattccattaggggatgactggctttat
gaaacgaaatatgatggctttcgatgcctcttactatgggatgaacaaccgatgcttatt
agtagaaatggacgcaatttaaatcattcgttcccggaaattatagagtattgtcaccaa
atatatgcctcaataaaagcatttttaccactcacctttgatggggagctagtgtattta
agcaattcatataaaagtgaattttcagttgttcaacaaagagggagaatgcaaaatcaa
gatgtcattgccaagcatgcacaagctttcccgatgcggcttctagtgtttgatgtttta
acgttgaaaggggaagcattcagcaatcgttatttaaaaactcgtaaagagcaattggcg
aagctagcagcaaaggtaaagcttccaaatgtagattatgaagacagaagagccatacaa
atggtgcaggcaagtgaggaaagtaaaattttatggcaggccatcaaggtctacaatggg
gaagggatggtggcaaagaaaagaacaagtaaatggctggataacacacgttcaagccat
tggttgaaaattaaaaactggcgttatgtgacggttattgtgacgcaatatgatcatagt
aatggttattttcaaggttcgatttatgacgaaggacatttacgagaggtcgttacattt
aaacatggcatgaaggaggaagagcatcaaaccctcgttgcttttttccaggctcaaggg
caacgtatgaaagaattatgggagctagagccctctatatgtgtggatattgcctgcata
gattttgatggtagtaagctccgcgagccaaaatttcatgcctttcgattggaattatca
ccagatagttgtcaatggcagcatatgcagcgtcagctgtttcctattcctgaaacagtt
cccattacacatcccgacaaacctgtatggccagaaataggtgtgacaaaggatcattat
ttatcgtacctacaaagtgtttcgccatacttgttaccatttcttctagatcgaccatta
acagtaatacgctatccacatggtgtgccaggggaaagcttttatcaaaagagtagacca
gataaactacctaactttgtagccacagcgatgatggatgagattgattatattgtctgt
aataatcttgaaacattgttatggctgggcaatcaattggcattagaattacacattcca
ttccaaacacgacaaaccatgtatccgacagagattgtctttgatttagatcctcctaca
acggaccatttttcttttgcgattgcaggtgcactagatttaaaaaaaattattgattac
tttcagctacaatcatttgtcaaaacttcgggcgggaaaggcttacagctctatatcccg
ttacccgcaaacaaatttacctatgaggaagttcgtgtctttactgaatttgtttgtcgt
tttttatgccagcaaaagccacatctatatacgattgagcgcttaaaaaagaatcgtcat
aataaattatatttagactatgtccagcatgctgaaggcaagacaattattgccccatat
tccactcgtggaaatgaattaggcttagttgcaacgccacttcattgggaagaggtaaat
gatgacttaaaaccttcttactttacgattcctgctgttatggagcgaatgaagaaaatc
actaatccctttaaatactttcgagaagtaggagaacaacaggattttcaagcggtttta
gagcgtatgaaagagtaa
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